PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163609.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 364aa MW: 42388.7 Da PI: 9.155

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163609.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.3	4.5e-22	35	127	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYAke+GF+vr +++++ r g++ + + Cs+eg+++e+k+ +ek+rr+r++tr+gCka++++++ ++g ++v+ ++l H+H l+ XP_019163609.1 35 EFYEEYAKEAGFDVRHGTKRRN-RFGQVSIKYLLCSREGYKAERKEPnnssKEKQRRRRVSTRIGCKARMVMTRCDKGGYKVHAIQLRHTHCLC 127 6***************9999.666699999******999888898999999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MEIHKDGSKY WTPPTPKDKT PFAGQQFETL ENGIEFYEEY AKEAGFDVRH GTKRRNRFGQ 60 VSIKYLLCSR EGYKAERKEP NNSSKEKQRR RRVSTRIGCK ARMVMTRCDK GGYKVHAIQL 120 RHTHCLCSDA AKPFLKMNRQ LDIGHKTFLT HCAKANIGPT KAFRLFKEMV GNFTDVGATC 180 IDFCNFRRDL LAYIAEADAQ MVIEDMYKRK EDNPDFYFDF DIDEDAKLTR LFWADAECWK 240 NYAYYGDVLS FDATYSTNRY KLVFVPFTGV DNHKRCITFG AGLIAKEDVE SYEWLVMKFK 300 TAMEYTPRCA TTDQDPALKI VIPQIMPTTR HRFCMWHIMA KVGEKVGVAL WHNTDFKKKL 360 NNTV

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MEIHKDGSKY WTPPTPKDKT PFAGQQFETL ENGIEFYEEY AKEAGFDVRH GTKRRNRFGQ  60
VSIKYLLCSR EGYKAERKEP NNSSKEKQRR RRVSTRIGCK ARMVMTRCDK GGYKVHAIQL  120
RHTHCLCSDA AKPFLKMNRQ LDIGHKTFLT HCAKANIGPT KAFRLFKEMV GNFTDVGATC  180
IDFCNFRRDL LAYIAEADAQ MVIEDMYKRK EDNPDFYFDF DIDEDAKLTR LFWADAECWK  240
NYAYYGDVLS FDATYSTNRY KLVFVPFTGV DNHKRCITFG AGLIAKEDVE SYEWLVMKFK  300
TAMEYTPRCA TTDQDPALKI VIPQIMPTTR HRFCMWHIMA KVGEKVGVAL WHNTDFKKKL  360
NNTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-56	FAR1 family protein