PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019163461.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 270aa    MW: 31272.5 Da    PI: 8.2513
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019163461.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.36e-2444136290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fY +YA  vGF+vr s+ k++ + g+i+k++ vCs+eg++e+++k+     t+k++r+r+++r+gC a+l+++++k+gk++v++++  H+H l+
  XP_019163461.1  44 FYMTYAGIVGFDVRHSSDKRN-KYGQIMKKQVVCSREGFKETKDKEtieegTTKQKRRRTTNRVGCPARLVLTLNKEGKYVVKTFVDRHTHVLC 136
                     9***************99998.6677******************999***99999************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MDNGGTCVMD VSPGGTHTWI PECDASLNPF EGQKFDTMED GITFYMTYAG IVGFDVRHSS  60
DKRNKYGQIM KKQVVCSREG FKETKDKETI EEGTTKQKRR RTTNRVGCPA RLVLTLNKEG  120
KYVVKTFVDR HTHVLCEEKY KRFMKVNRKI DIGHQEFITN CGKVNIGASK SFDMYAEMVG  180
GPENVGATQQ DFKNYKRELL AYMKEKDIQM VISQYLEKKN DCVDMYFEYD VNEKDQLAWV  240
FWADRQARLH YGAFGDVVSF DATYKTNRYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-30FAR1 family protein