PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163336.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 1023aa MW: 113414 Da PI: 5.8239

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133	1e-41	157	234	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh+l+efD++krsCrrrLa+hn+rrrk+q+ XP_019163336.1 157 VCQVEDCGADLSKAKDYHRRHKVCEMHSKATKALVGNIMQRFCQQCSRFHALQEFDDGKRSCRRRLAGHNKRRRKTQP 234 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1023 aa Download sequence
MEARIGGQAQ LFYDLGAADL RAVGKRSLEW DPSDWKWDGH LFLARPLNPN PSSNYQSRQF 60 FPLETGISTA VVSSTSNSSS SCSDEVNIGS EKETRELEKR QRVIVVEEDN LEGGETGTLT 120 LKLGERRFPS NDRELQTLDG TIGKKIKLSG PTSNRAVCQV EDCGADLSKA KDYHRRHKVC 180 EMHSKATKAL VGNIMQRFCQ QCSRFHALQE FDDGKRSCRR RLAGHNKRRR KTQPETVINS 240 NTMNDSQASG YLLMSLLKIL ANMHSNRGNS TEDQDLLSHL LKSLASQGAL SGDKSISGIL 300 NESSNLLNNG PAFRDSDMIS ALISNGSQAP SRPKEQPCTA SASKMPTKGL DVHDVGVEDM 360 RASSSQRPVN MFSVESSSLV TAPGQESSAG RNKLITFDLN DMYVDSDDGT EDVERLPVPA 420 DVVTGSLECP SWVQKDSHQS SPPQASGQSD SGSAQSPSSS NGDPQSRTDR IVFKLFGKDP 480 SDFPFLLRAQ ILDWLSHSPT DIESYIRPGC VILTIYLRLP ESAWEELCCS LNSSLSRLLD 540 APDNDSFWRN GWIYVRVQNQ IALLCSGKVL VETSLPFNSY DYSTILSVKP IAVPVSERSQ 600 FTVKGFNLST PLARLHCALE GNYLVPEASV EESEHSNELE EHHEIQSVNF TCSVPEAAGR 660 GFIEVEDHDG LSSSFFPFIV AEEDVCSEIR TLENEIELSQ KDYINGQIDK LETRNQAMDF 720 LHEMGWLLQR NKLKSRMSKL DASASCCFPS KRFAWLMEFS IDHNWCAVVK KLLDIFFNGS 780 VGTGEQSSSL KLLFSEMGLL HKAVRRNSRP LVELLLRYSP DRVADELRLE YEEALGGGFL 840 FRPNILGPSG LTPLHVAAGI DGSEDVIDAL TDDPGKVAIE AWKNGRDSTG FTPEDYARLR 900 GHYSYIHLVQ RKLNRKVSTT EHVVVDIGSA VGDGIYKLKQ NDGGSTSFEV SRLSRSREEG 960 CRVCNQKMGY VIRGRSLLYK PAMLSMVAIA AVCVCVALLF KSSPEVLYVF QPFRWEMLDY 1020 GSS

Sequence ? help Back to Top

Protein Sequence Length: 1023 aa Download sequence

MEARIGGQAQ LFYDLGAADL RAVGKRSLEW DPSDWKWDGH LFLARPLNPN PSSNYQSRQF  60
FPLETGISTA VVSSTSNSSS SCSDEVNIGS EKETRELEKR QRVIVVEEDN LEGGETGTLT  120
LKLGERRFPS NDRELQTLDG TIGKKIKLSG PTSNRAVCQV EDCGADLSKA KDYHRRHKVC  180
EMHSKATKAL VGNIMQRFCQ QCSRFHALQE FDDGKRSCRR RLAGHNKRRR KTQPETVINS  240
NTMNDSQASG YLLMSLLKIL ANMHSNRGNS TEDQDLLSHL LKSLASQGAL SGDKSISGIL  300
NESSNLLNNG PAFRDSDMIS ALISNGSQAP SRPKEQPCTA SASKMPTKGL DVHDVGVEDM  360
RASSSQRPVN MFSVESSSLV TAPGQESSAG RNKLITFDLN DMYVDSDDGT EDVERLPVPA  420
DVVTGSLECP SWVQKDSHQS SPPQASGQSD SGSAQSPSSS NGDPQSRTDR IVFKLFGKDP  480
SDFPFLLRAQ ILDWLSHSPT DIESYIRPGC VILTIYLRLP ESAWEELCCS LNSSLSRLLD  540
APDNDSFWRN GWIYVRVQNQ IALLCSGKVL VETSLPFNSY DYSTILSVKP IAVPVSERSQ  600
FTVKGFNLST PLARLHCALE GNYLVPEASV EESEHSNELE EHHEIQSVNF TCSVPEAAGR  660
GFIEVEDHDG LSSSFFPFIV AEEDVCSEIR TLENEIELSQ KDYINGQIDK LETRNQAMDF  720
LHEMGWLLQR NKLKSRMSKL DASASCCFPS KRFAWLMEFS IDHNWCAVVK KLLDIFFNGS  780
VGTGEQSSSL KLLFSEMGLL HKAVRRNSRP LVELLLRYSP DRVADELRLE YEEALGGGFL  840
FRPNILGPSG LTPLHVAAGI DGSEDVIDAL TDDPGKVAIE AWKNGRDSTG FTPEDYARLR  900
GHYSYIHLVQ RKLNRKVSTT EHVVVDIGSA VGDGIYKLKQ NDGGSTSFEV SRLSRSREEG  960
CRVCNQKMGY VIRGRSLLYK PAMLSMVAIA AVCVCVALLF KSSPEVLYVF QPFRWEMLDY  1020
GSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein