PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019163230.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 292aa    MW: 30995.3 Da    PI: 7.025
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019163230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.9e-101153444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     W+ e d+ + +a + ++ +   +W++Ia+ ++ g++l+++k+++
   XP_019163230.1 11 WSREQDKAFENALATYPEDssdRWEKIAADVP-GKSLEEVKLHY 53
                     ********************************.**********9 PP
2Myb_DNA-binding43.47.6e-14120164347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_019163230.1 120 PWTEEEHRFFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 164
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MTADESSNAV WSREQDKAFE NALATYPEDS SDRWEKIAAD VPGKSLEEVK LHYEILIDDV  60
SRIESGCVPV PCYNSSSDNS ASHDGDEGTS KKGGNSGNTN SDSNHGKSMR ADQERRKGIP  120
WTEEEHRFFL LGLEKYGKGD WRSISRNFVV TRTPTQVASH AQKYFIRLNS MNKDRRRSSI  180
HDITNVNSGD VSVGQGPITG QTNGTAAAAA AGGSSGKSNK PQAPALAPGV AMYGGATTIG  240
QPVGVPLVPA VGTPMNLPPQ AHMAYGTPSI PGAVVPGAPV NMAPMPHTSA HR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-108MYB family protein