PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163082.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 692aa MW: 76368.1 Da PI: 8.1286

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.6	4.7e-18	280	379	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvlt sd+++ grlvlpk +ae++ +++ e+ ++++d++g++W++ +++ +++s++yvl+ G ++ +L++gD+v+F++++ +++ XP_019163082.1 280 FDKVLTASDAGRIGRLVLPKACAEAYfpPIDQSEGLPIKIQDLTGKEWTFLFRFwlNNNSRMYVLE-GVTPCIRSLQLQAGDTVTFSRID-PGGK 372 89************************555556667***********9989999999.******************887.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_019163082.1 373 LVMSFRK 379 7777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MESTICMNEL CRGATSSSEW KRGWSLKSGG FAKLCYNCGS AYENVAFCEM FHLDESGWRK 60 CRICGKHIHC GCIASKYLYE HMDYGGVGCV SCVSRLGNHA LRSVQPIGVE NRVDGSNSAK 120 GKLLKFSNAM ETCESVQHLG TLDDDNNIKQ EKRKLSGSQV ETCLPNLNVC ESFDQPSNFS 180 LNTPVNCSSS FNGGREQNMV SPLHQGQQSV HHMLPKQPKA SQNHDSKSKG GTKTQTNIVR 240 PPAEGRGGRA RLLPRYQSKI TDQELQQISG DLKSTVVPLF DKVLTASDAG RIGRLVLPKA 300 CAEAYFPPID QSEGLPIKIQ DLTGKEWTFL FRFWLNNNSR MYVLEGVTPC IRSLQLQAGD 360 TVTFSRIDPG GKLVMSFRKG TNNGDTRGSQ HSNLPGAGGV SENHTTKRLP TASVANNGWM 420 IPGLKTDNSS QSEILVSQKK TQNIGSKRKR FLMQVEDAIE LRITMEEAQD LFCPPPSLKP 480 TILTIEDIEF EAYNEPPVFG KATISVPDEI NQTQPATSLR VTKGSKRQKV TIEKTNDHEP 540 SGLDALNTED NTGGLGKHSV GATTKHPRHH PGCACIVCIQ PPSGTGKHQP NCDCTICSTL 600 RRRLNTFNQR KKKRQSDHET ELAVGKDKLP PPPSERDTAN EPGAIHMNHS ENDRDLNRQR 660 YPPMDVRSCQ GQLDLNCHPS CEDDLQVEVD RG

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MESTICMNEL CRGATSSSEW KRGWSLKSGG FAKLCYNCGS AYENVAFCEM FHLDESGWRK  60
CRICGKHIHC GCIASKYLYE HMDYGGVGCV SCVSRLGNHA LRSVQPIGVE NRVDGSNSAK  120
GKLLKFSNAM ETCESVQHLG TLDDDNNIKQ EKRKLSGSQV ETCLPNLNVC ESFDQPSNFS  180
LNTPVNCSSS FNGGREQNMV SPLHQGQQSV HHMLPKQPKA SQNHDSKSKG GTKTQTNIVR  240
PPAEGRGGRA RLLPRYQSKI TDQELQQISG DLKSTVVPLF DKVLTASDAG RIGRLVLPKA  300
CAEAYFPPID QSEGLPIKIQ DLTGKEWTFL FRFWLNNNSR MYVLEGVTPC IRSLQLQAGD  360
TVTFSRIDPG GKLVMSFRKG TNNGDTRGSQ HSNLPGAGGV SENHTTKRLP TASVANNGWM  420
IPGLKTDNSS QSEILVSQKK TQNIGSKRKR FLMQVEDAIE LRITMEEAQD LFCPPPSLKP  480
TILTIEDIEF EAYNEPPVFG KATISVPDEI NQTQPATSLR VTKGSKRQKV TIEKTNDHEP  540
SGLDALNTED NTGGLGKHSV GATTKHPRHH PGCACIVCIQ PPSGTGKHQP NCDCTICSTL  600
RRRLNTFNQR KKKRQSDHET ELAVGKDKLP PPPSERDTAN EPGAIHMNHS ENDRDLNRQR  660
YPPMDVRSCQ GQLDLNCHPS CEDDLQVEVD RG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-156	B3 family protein