PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162994.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 528aa    MW: 59017.1 Da    PI: 6.0907
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162994.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.43e-1381565281374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+avs++dl  aq+l+++l+e++s +g+p+qRl ay++e+L arla s+s++yk+l+++e +   s e l+++++++ev+P++kf++
  XP_019162994.1 156 LKQVLIACAKAVSDNDLLTAQWLMSELREMVSVSGEPIQRLGAYMLEGLVARLAASGSSIYKSLRCKEPT---SFELLSYMHILYEVCPYFKFGY 247
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++++ +  +   l+ +g+rL+k+Ae+++vpfef++ +a   +d
  XP_019162994.1 248 MSANGAIAEAMKDENRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSSLShaHGGGLSLVGKRLSKLAESFKVPFEFHA-AAIPGND 341
                     ******************************************************877678999************************.7778888 PP

            GRAS 189 lelee..LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     ++le+  ++++pgEalaVn++++lh+++desvs++++rde+L+lvksl+Pkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr+++e
  XP_019162994.1 342 VQLENpgIQIQPGEALAVNFAYMLHHIPDESVSTQNHRDELLRLVKSLNPKVVTLVEQESNTNTSAFFPRFLETLDYYTAMFESIDVTLPRDHKE 436
                     8777645999************************************************************************************* PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ri+vE+++l+r++vn+vaceg er+erhe l+kW +r+++aGF+p+pls+ +++++k ll+ ++++ yr+ee++g+l+lgW++r Lv+ +aW+
  XP_019162994.1 437 RINVEQHCLARDVVNIVACEGIERVERHELLGKWMSRFRMAGFSPYPLSSVVNATIKKLLESYSEK-YRLEERNGALYLGWMNRDLVASCAWK 528
                     ****************************************************************65.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MQAAQRLRRT GMSNVLCYPP VQKADPYCLP QFQILDHELS YNNTNVANPV HASRNLYCTL  60
ESSSVSESRA LYGSPMSQQG SRSYPSDNNY GSPISGSCIT DDMSSFIHKL KELETAMLGP  120
DSDVLESHDN TFPSSIASPE IDSWRQMMEA IPRGDLKQVL IACAKAVSDN DLLTAQWLMS  180
ELREMVSVSG EPIQRLGAYM LEGLVARLAA SGSSIYKSLR CKEPTSFELL SYMHILYEVC  240
PYFKFGYMSA NGAIAEAMKD ENRVHIIDFQ IAQGSQWITL IQAFAARPGG PPHIRITGID  300
DSSLSHAHGG GLSLVGKRLS KLAESFKVPF EFHAAAIPGN DVQLENPGIQ IQPGEALAVN  360
FAYMLHHIPD ESVSTQNHRD ELLRLVKSLN PKVVTLVEQE SNTNTSAFFP RFLETLDYYT  420
AMFESIDVTL PRDHKERINV EQHCLARDVV NIVACEGIER VERHELLGKW MSRFRMAGFS  480
PYPLSSVVNA TIKKLLESYS EKYRLEERNG ALYLGWMNRD LVASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein