PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162823.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 523aa MW: 57909.9 Da PI: 8.124

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162823.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l++av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l XP_019162823.1 59 KGGWTPEEDNTLKQAVAAFKGKCWKKIAEFFP-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	58.5	1.6e-18	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v ++G W+ Ia+ ++ gR +kqc++rw+++l XP_019162823.1 111 KGPWTQEEDDKIIELVGKYGATKWSVIAKSLP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	48.7	1.7e-15	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++W eE++ l++a++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_019162823.1 163 KDAWILEEELALINAHRVHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 578999**************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MDEERIEDCC PENKQSIAAS SSSVSENSGS VNLKSPGVSS PAPSSPVHRR TSGPIRRAKG 60 GWTPEEDNTL KQAVAAFKGK CWKKIAEFFP DRSEVQCLHR WQKVLNPELV KGPWTQEEDD 120 KIIELVGKYG ATKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWILEE ELALINAHRV 180 HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGN LPPLAKNVSQ NTCKDISRTS 240 PTEKGLECLS KRSDSAELAS SGTTDVCKIV DDKIHPEGRS AIVDMGASTS SPHIESADSE 300 DAPSEVKSSV CKSQSKTTPQ LITNHASSST EILDRSRSIG EREQFREIQT SCEIPIYGSL 360 YYEPPKLGSF VTLDSDFLNL CWDNPERELN LGFSPTFPTP PSVKHGNLCV QTPESILKIA 420 AQSFRNTPSI LRKRKTESQS STPSNKFGKT DDDGLDDIQL SNTKPFNASP PYRLRSKRTS 480 VLKSVEKQLD FTFNKEQDDN CPTTSGGSTV KQISQATKAM SDE

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MDEERIEDCC PENKQSIAAS SSSVSENSGS VNLKSPGVSS PAPSSPVHRR TSGPIRRAKG  60
GWTPEEDNTL KQAVAAFKGK CWKKIAEFFP DRSEVQCLHR WQKVLNPELV KGPWTQEEDD  120
KIIELVGKYG ATKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWILEE ELALINAHRV  180
HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGN LPPLAKNVSQ NTCKDISRTS  240
PTEKGLECLS KRSDSAELAS SGTTDVCKIV DDKIHPEGRS AIVDMGASTS SPHIESADSE  300
DAPSEVKSSV CKSQSKTTPQ LITNHASSST EILDRSRSIG EREQFREIQT SCEIPIYGSL  360
YYEPPKLGSF VTLDSDFLNL CWDNPERELN LGFSPTFPTP PSVKHGNLCV QTPESILKIA  420
AQSFRNTPSI LRKRKTESQS STPSNKFGKT DDDGLDDIQL SNTKPFNASP PYRLRSKRTS  480
VLKSVEKQLD FTFNKEQDDN CPTTSGGSTV KQISQATKAM SDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-141	MYB family protein