PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162578.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 283aa    MW: 31338.9 Da    PI: 5.1503
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.86.6e-2288172290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Yn+YA+++GFsvrk +++++  +++i +++f+Csk g+++++  k      ++  trtgC a ++    +dg w vtk e+ HnHel+
  XP_019162578.1  88 VYNSYAYRLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 172
                     7********************99999***************99877....8999*********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MEDGTEQTNF AVDDWHSIQG DLVIVFAIVH FGFLYDYVIS SDVFSEGIVD GSVSSDQVDV  60
DVDGSSSIPV DQDLVGLVVS NADEAFEVYN SYAYRLGFSV RKGHQRYKGS SNTIQMKKFC  120
CSKAGYKANS GVKAYSKIDT RTGCGAFVQF DVGDDGLWTV TKHEKVHNHE LCVFNKSHLL  180
RSHRSVGDNQ LLYLQGLKDS GVALADGIRF LKHQSGGSPL VGFTSRDAYN SMAADTVKRL  240
DGTDSNSLIE IFRRRQSTET DFFFDFELDL DARLCSFFGG MVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-18FAR1 family protein