PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162488.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family E2F/DP
Protein Properties Length: 357aa    MW: 38838.2 Da    PI: 6.4169
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-2798180271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_019162488.1  98 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnnnlsspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 180
                     689********...*****999*******************************************************.*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MVNNHEDGEK NPSRGGNGGA GGGGATRSWG TTVSGQSVST SGSIGSPSSR SEAAIATPAS  60
ENTFARVTSL DNHADDAGSL GAAGKKKRGQ RAAGGDKSGR GLRQFSMKVC EKVESKGRTT  120
YNEVADELVA EFSDPNNNLS SPDQQQYDEK NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG  180
LPRTSVNDIE ELKTERLGLR NRIEKKAAYL EELEEQYAGL QNLMKRNEQL YSSGNTPSGG  240
VALPFILVQT RPHATVEVEI SEDMQLVHFD FNSTPFELHD DNYVLKAMNF CERPKDDAVP  300
QNLPADGGEG SSMPNMFRLQ IPNPPPIQNI SGRPPTSPPL PGILKARVKH EHPPPST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-117E2F/DP family protein