PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162445.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 378aa MW: 42576.7 Da PI: 4.8486

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162445.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.3	9.7e-20	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+++++G g+W+t ++ g+ R++k+c++rw +yl XP_019162445.1 14 KGPWTPEEDQKLVDYIQKHGCGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.4	2.9e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_019162445.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MGRAPCCDKD GLKKGPWTPE EDQKLVDYIQ KHGCGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDLSSILN TPSPLYNYPC QQINLSRLLG LQQPLLNPHV LRLASSLFSP 180 PVQQQRHGLN PEFGLQNNNA GVVQENQMCN LENPGFLAAQ DVPFSCPQSV TQEQTELPVQ 240 TDVTFSQMTQ QPDNVDQFPP HFASFPIGNC QENEWQSNGI PSSLTEDYLP LENYGYYQPA 300 AADPQSVMDP PPSDASTFCR SFQSVLSTPS SSPAPLNSNS TYINSCSTTT MDDEIDISYS 360 SNLIDFDYSS ILEVNEFM

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MGRAPCCDKD GLKKGPWTPE EDQKLVDYIQ KHGCGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDLSSILN TPSPLYNYPC QQINLSRLLG LQQPLLNPHV LRLASSLFSP  180
PVQQQRHGLN PEFGLQNNNA GVVQENQMCN LENPGFLAAQ DVPFSCPQSV TQEQTELPVQ  240
TDVTFSQMTQ QPDNVDQFPP HFASFPIGNC QENEWQSNGI PSSLTEDYLP LENYGYYQPA  300
AADPQSVMDP PPSDASTFCR SFQSVLSTPS SSPAPLNSNS TYINSCSTTT MDDEIDISYS  360
SNLIDFDYSS ILEVNEFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-100	MYB family protein