PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162408.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 805aa MW: 88215 Da PI: 7.8807

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162408.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.9	4.3e-19	272	371	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd++k grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_019162408.1 272 FEKMLSASDAGKIGRLVLPKKCAEAYfpPISHPEGLPLKVQDLKGQEWLFQFRFwpNNNSRMYVLE-GVTPCMQSMQLQAGDIVTFSRIE-PEGK 364 89************************555666777***********99899999999.*******************887.5554 PP .EEEEE-S CS B3 92 lvvkvfrk 99 lv+ +rk XP_019162408.1 365 LVM-GCRK 371 555.5544 PP

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence
MKFLVQQIHC GCIVSFHTFV LLDAGGIECI TCARKSFILT PNPAWPPPSD FLPLQPEGIK 60 DSRSWTPIAG SGPVPWRQAP SLFNGSVIQT KLQPKTPYGD ITGSIDRLHL NERPPVSSLV 120 NKRKEENFGS LLNRTLKSCV SGRLENEHTG FSCSEQSNSF LSGTQQTSLS KIDFSAPNFR 180 LTVSSTPKKE ASDRSKVFAT HIQPTTLSPS VGKQSCSQNG TDSSGEAQMR NVRSRGDGGG 240 KHQLLPRYWP RITDQELQQI SGDTNSVITP LFEKMLSASD AGKIGRLVLP KKCAEAYFPP 300 ISHPEGLPLK VQDLKGQEWL FQFRFWPNNN SRMYVLEGVT PCMQSMQLQA GDIVTFSRIE 360 PEGKLVMGCR KSSSTPSAHQ GYGTSNSPIG VPTNGNASTK NIKPGEIVTK CSIKAKEVVE 420 TKPPVRSKRK NSTSNSKSKR LKVDCEELIE LKLTVVQAQQ LMRPSPNDTP TVIVIEGCDF 480 EEYEQDAPII GRPTIPSTGS LGEKIQWVQC EDCFKWRKIP DDALLPGRWT CSENLWDPDR 540 SVCSAVEELT VECLADLVPT IGKAPKKMKA SKQDMNSPDT IEGLDALANL AIQEEGEGVL 600 ASSSQATTKH PRHRPGCTCI VCIQPPSGKG PKHKQQCDCN VCKSVKRRFK TLMMKKGKKL 660 SEKEAEAAAN VNSPCSDAGA FSPTHEEPNS ESCLDDTNDI IEKKSSPSPI KGEIDLNIKP 720 EREDLSPRCD SGGVMRFLQD AAERFIWQQR GLPSSFANGN PVGHEVQDHV NLNNCGSDGS 780 HQTSDADRHM ALSIDNVSSV VHAEK

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence

MKFLVQQIHC GCIVSFHTFV LLDAGGIECI TCARKSFILT PNPAWPPPSD FLPLQPEGIK  60
DSRSWTPIAG SGPVPWRQAP SLFNGSVIQT KLQPKTPYGD ITGSIDRLHL NERPPVSSLV  120
NKRKEENFGS LLNRTLKSCV SGRLENEHTG FSCSEQSNSF LSGTQQTSLS KIDFSAPNFR  180
LTVSSTPKKE ASDRSKVFAT HIQPTTLSPS VGKQSCSQNG TDSSGEAQMR NVRSRGDGGG  240
KHQLLPRYWP RITDQELQQI SGDTNSVITP LFEKMLSASD AGKIGRLVLP KKCAEAYFPP  300
ISHPEGLPLK VQDLKGQEWL FQFRFWPNNN SRMYVLEGVT PCMQSMQLQA GDIVTFSRIE  360
PEGKLVMGCR KSSSTPSAHQ GYGTSNSPIG VPTNGNASTK NIKPGEIVTK CSIKAKEVVE  420
TKPPVRSKRK NSTSNSKSKR LKVDCEELIE LKLTVVQAQQ LMRPSPNDTP TVIVIEGCDF  480
EEYEQDAPII GRPTIPSTGS LGEKIQWVQC EDCFKWRKIP DDALLPGRWT CSENLWDPDR  540
SVCSAVEELT VECLADLVPT IGKAPKKMKA SKQDMNSPDT IEGLDALANL AIQEEGEGVL  600
ASSSQATTKH PRHRPGCTCI VCIQPPSGKG PKHKQQCDCN VCKSVKRRFK TLMMKKGKKL  660
SEKEAEAAAN VNSPCSDAGA FSPTHEEPNS ESCLDDTNDI IEKKSSPSPI KGEIDLNIKP  720
EREDLSPRCD SGGVMRFLQD AAERFIWQQR GLPSSFANGN PVGHEVQDHV NLNNCGSDGS  780
HQTSDADRHM ALSIDNVSSV VHAEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	428	442	KRKNSTSNSKSKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-140	B3 family protein