PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162407.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 836aa MW: 91745.8 Da PI: 7.7989

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.9	4.5e-19	303	402	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd++k grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_019162407.1 303 FEKMLSASDAGKIGRLVLPKKCAEAYfpPISHPEGLPLKVQDLKGQEWLFQFRFwpNNNSRMYVLE-GVTPCMQSMQLQAGDIVTFSRIE-PEGK 395 89************************555666777***********99899999999.*******************887.5554 PP .EEEEE-S CS B3 92 lvvkvfrk 99 lv+ +rk XP_019162407.1 396 LVM-GCRK 402 555.5544 PP

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence
MSSSSTQPSN VCFNSNCKEV SELPRKGWRR RTGEFADLCD RCASAYEEGK FCETFHLNAS 60 GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECITCARKS FILTPNPAWP PPSDFLPLQP 120 EGIKDSRSWT PIAGSGPVPW RQAPSLFNGS VIQTKLQPKT PYGDITGSID RLHLNERPPV 180 SSLVNKRKEE NFGSLLNRTL KSCVSGRLEN EHTVSSTPKK EASDRSKVFA THIQPTTLSP 240 SVGKQSCSQN GTDSSGEAQM RNVRSRGDGG GKHQLLPRYW PRITDQELQQ ISGDTNSVIT 300 PLFEKMLSAS DAGKIGRLVL PKKCAEAYFP PISHPEGLPL KVQDLKGQEW LFQFRFWPNN 360 NSRMYVLEGV TPCMQSMQLQ AGDIVTFSRI EPEGKLVMGC RKSSSTPSAH QGYGTSNSPI 420 GVPTNGNAST KNIKPGEIVT KCSIKAKEVV ETKPPVRSKR KNSTSNSKSK RLKVDCEELI 480 ELKLTVVQAQ QLMRPSPNDT PTVIVIEGCD FEEYEQDAPI IGRPTIPSTG SLGEKIQWVQ 540 CEDCFKWRKI PDDALLPGRW TCSENLWDPD RSVCSAVEEL TVECLADLVP TIGKAPKKMK 600 ASKQDMNSPD TIEGLDALAN LAIQEEGEGV LASSSQATTK HPRHRPGCTC IVCIQPPSGK 660 GPKHKQQCDC NVCKSVKRRF KTLMMKKGKK LSEKEAEAAA NVNSPCSDAG AFSPTHEEPN 720 SESCLDDTND IIEKKSSPSP IKGEIDLNIK PEREDLSPRC DSGGVMRFLQ DAAERFIWQQ 780 RGLPSSFANG NPVGHEVQDH VNLNNCGSDG SHQTSDADRH MALSIDNVSS VVHAEK

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence

MSSSSTQPSN VCFNSNCKEV SELPRKGWRR RTGEFADLCD RCASAYEEGK FCETFHLNAS  60
GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECITCARKS FILTPNPAWP PPSDFLPLQP  120
EGIKDSRSWT PIAGSGPVPW RQAPSLFNGS VIQTKLQPKT PYGDITGSID RLHLNERPPV  180
SSLVNKRKEE NFGSLLNRTL KSCVSGRLEN EHTVSSTPKK EASDRSKVFA THIQPTTLSP  240
SVGKQSCSQN GTDSSGEAQM RNVRSRGDGG GKHQLLPRYW PRITDQELQQ ISGDTNSVIT  300
PLFEKMLSAS DAGKIGRLVL PKKCAEAYFP PISHPEGLPL KVQDLKGQEW LFQFRFWPNN  360
NSRMYVLEGV TPCMQSMQLQ AGDIVTFSRI EPEGKLVMGC RKSSSTPSAH QGYGTSNSPI  420
GVPTNGNAST KNIKPGEIVT KCSIKAKEVV ETKPPVRSKR KNSTSNSKSK RLKVDCEELI  480
ELKLTVVQAQ QLMRPSPNDT PTVIVIEGCD FEEYEQDAPI IGRPTIPSTG SLGEKIQWVQ  540
CEDCFKWRKI PDDALLPGRW TCSENLWDPD RSVCSAVEEL TVECLADLVP TIGKAPKKMK  600
ASKQDMNSPD TIEGLDALAN LAIQEEGEGV LASSSQATTK HPRHRPGCTC IVCIQPPSGK  660
GPKHKQQCDC NVCKSVKRRF KTLMMKKGKK LSEKEAEAAA NVNSPCSDAG AFSPTHEEPN  720
SESCLDDTND IIEKKSSPSP IKGEIDLNIK PEREDLSPRC DSGGVMRFLQ DAAERFIWQQ  780
RGLPSSFANG NPVGHEVQDH VNLNNCGSDG SHQTSDADRH MALSIDNVSS VVHAEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	459	473	KRKNSTSNSKSKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-171	B3 family protein