PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162404.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 902aa MW: 98909.8 Da PI: 7.7861

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.7	5.1e-19	336	435	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd++k grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_019162404.1 336 FEKMLSASDAGKIGRLVLPKKCAEAYfpPISHPEGLPLKVQDLKGQEWLFQFRFwpNNNSRMYVLE-GVTPCMQSMQLQAGDIVTFSRIE-PEGK 428 89************************555666777***********99899999999.*******************887.5554 PP .EEEEE-S CS B3 92 lvvkvfrk 99 lv+ +rk XP_019162404.1 429 LVM-GCRK 435 555.5544 PP

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence
MSSSSTQPSN VCFNSNCKEV SELPRKGWRR RTGEFADLCD RCASAYEEGK FCETFHLNAS 60 GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECITCARKS FILTPNPAWP PPSDFLPLQP 120 EGIKDSRSWT PIAGSGPVPW RQAPSLFNGS VIQTKLQPKT PYGDITGSID RLHLNERPPV 180 SSLVNKRKEE NFGSLLNRTL KSCVSGRLEN EHTGFSCSEQ SNSFLSGTQQ TSLSKIDFSA 240 PNFRLTVSST PKKEASDRSK VFATHIQPTT LSPSVGKQSC SQNGTDSSGE AQMRNVRSRG 300 DGGGKHQLLP RYWPRITDQE LQQISGDTNS VITPLFEKML SASDAGKIGR LVLPKKCAEA 360 YFPPISHPEG LPLKVQDLKG QEWLFQFRFW PNNNSRMYVL EGVTPCMQSM QLQAGDIVTF 420 SRIEPEGKLV MGCRKSSSTP SAHQGYGTSN SPIGVPTNGN ASTKNIKPGE IVTKCSIKGN 480 LASPGVLINN QFPILDSRNI LSDLNIKSNY IAKEVVETKP PVRSKRKNST SNSKSKRLKV 540 DCEELIELKL TVVQAQQLMR PSPNDTPTVI VIEGCDFEEY EQDAPIIGRP TIPSTGSLGE 600 KIQWVQCEDC FKWRKIPDDA LLPGRWTCSE NLWDPDRSVC SAVEELTVEC LADLVPTIGK 660 APKKMKASKQ DMNSPDTIEG LDALANLAIQ EEGEGVLASS SQATTKHPRH RPGCTCIVCI 720 QPPSGKGPKH KQQCDCNVCK SVKRRFKTLM MKKGKKLSEK EAEAAANVNS PCSDAGAFSP 780 THEEPNSESC LDDTNDIIEK KSSPSPIKGE IDLNIKPERE DLSPRCDSGG VMRFLQDAAE 840 RFIWQQRGLP SSFANGNPVG HEVQDHVNLN NCGSDGSHQT SDADRHMALS IDNVSSVVHA 900 EK

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence

MSSSSTQPSN VCFNSNCKEV SELPRKGWRR RTGEFADLCD RCASAYEEGK FCETFHLNAS  60
GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECITCARKS FILTPNPAWP PPSDFLPLQP  120
EGIKDSRSWT PIAGSGPVPW RQAPSLFNGS VIQTKLQPKT PYGDITGSID RLHLNERPPV  180
SSLVNKRKEE NFGSLLNRTL KSCVSGRLEN EHTGFSCSEQ SNSFLSGTQQ TSLSKIDFSA  240
PNFRLTVSST PKKEASDRSK VFATHIQPTT LSPSVGKQSC SQNGTDSSGE AQMRNVRSRG  300
DGGGKHQLLP RYWPRITDQE LQQISGDTNS VITPLFEKML SASDAGKIGR LVLPKKCAEA  360
YFPPISHPEG LPLKVQDLKG QEWLFQFRFW PNNNSRMYVL EGVTPCMQSM QLQAGDIVTF  420
SRIEPEGKLV MGCRKSSSTP SAHQGYGTSN SPIGVPTNGN ASTKNIKPGE IVTKCSIKGN  480
LASPGVLINN QFPILDSRNI LSDLNIKSNY IAKEVVETKP PVRSKRKNST SNSKSKRLKV  540
DCEELIELKL TVVQAQQLMR PSPNDTPTVI VIEGCDFEEY EQDAPIIGRP TIPSTGSLGE  600
KIQWVQCEDC FKWRKIPDDA LLPGRWTCSE NLWDPDRSVC SAVEELTVEC LADLVPTIGK  660
APKKMKASKQ DMNSPDTIEG LDALANLAIQ EEGEGVLASS SQATTKHPRH RPGCTCIVCI  720
QPPSGKGPKH KQQCDCNVCK SVKRRFKTLM MKKGKKLSEK EAEAAANVNS PCSDAGAFSP  780
THEEPNSESC LDDTNDIIEK KSSPSPIKGE IDLNIKPERE DLSPRCDSGG VMRFLQDAAE  840
RFIWQQRGLP SSFANGNPVG HEVQDHVNLN NCGSDGSHQT SDADRHMALS IDNVSSVVHA  900
EK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	525	539	KRKNSTSNSKSKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-168	B3 family protein