PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162226.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GeBP

Protein Properties

Length: 343aa MW: 38396.8 Da PI: 5.9212

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	107.3	1.1e-33	145	237	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqrlwse+Dei+lL G+i++++k++ +p+ d+daf++f+++s++f+vsk+q+ +K++r+KkK+ ++ k ++sfsk+h+qk++++s+kiW XP_019162226.1 145 LFQRLWSEDDEIALLEGMIEYTEKENGDPYTDLDAFHDFIRNSLHFTVSKKQVQNKMKRMKKKYINNAGK----GKKSFSKPHEQKTYQVSRKIW 235 79*****************999999***************************************....5569*************** PP DUF573 97 gs 98 g+ XP_019162226.1 236 GK 237 95 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MAKNRSEPKK SVEAAEEESS TDNEGSESDS ESEPEPEPEK TQTQMQIAKS PSEAAMKVTE 60 ASSTPAKIQA TSSSSYETDS ESDSESESQK PAPIIKPTDD PRESAQTKPR KSDADREVTE 120 SKRQKRNPEE ISEIKASADE SKKQLFQRLW SEDDEIALLE GMIEYTEKEN GDPYTDLDAF 180 HDFIRNSLHF TVSKKQVQNK MKRMKKKYIN NAGKGKKSFS KPHEQKTYQV SRKIWGKGDE 240 KMEDSSQVTV VHALMAYNGS AKINKNSMKK APVVEDAIET PAAASSGWKN SLSKNKGGIV 300 ISEEKRREIE KKRKAVVVAE IDLFLKELEL IQEQVKATLG AMK

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MAKNRSEPKK SVEAAEEESS TDNEGSESDS ESEPEPEPEK TQTQMQIAKS PSEAAMKVTE  60
ASSTPAKIQA TSSSSYETDS ESDSESESQK PAPIIKPTDD PRESAQTKPR KSDADREVTE  120
SKRQKRNPEE ISEIKASADE SKKQLFQRLW SEDDEIALLE GMIEYTEKEN GDPYTDLDAF  180
HDFIRNSLHF TVSKKQVQNK MKRMKKKYIN NAGKGKKSFS KPHEQKTYQV SRKIWGKGDE  240
KMEDSSQVTV VHALMAYNGS AKINKNSMKK APVVEDAIET PAAASSGWKN SLSKNKGGIV  300
ISEEKRREIE KKRKAVVVAE IDLFLKELEL IQEQVKATLG AMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	7e-27	GeBP family protein