PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162011.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 539aa MW: 61903.2 Da PI: 7.3

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162011.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.9	2.5e-21	47	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+ +GF+vrks+ k+ r g i k+++vC++eg+++ + ++ t++++r+r+++r+gC a+++ +++++g+++v+k+e+ H+H l+ XP_019162011.1 47 YYKTYASIIGFDVRKSSDIKN-RYGIILKKKLVCNREGYKDAKPDTtagqntTTQTKRRRPSNRVGCMARIVFRRNSKGRYVVKKFEEGHTHCLC 140 8**************9998.7888**********999988999999999***********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MEEGGKIQHC VMDESQNGTS IWFTECDPSI KPAVDQVFDT LEDGIAYYKT YASIIGFDVR 60 KSSDIKNRYG IILKKKLVCN REGYKDAKPD TTAGQNTTTQ TKRRRPSNRV GCMARIVFRR 120 NSKGRYVVKK FEEGHTHCLC EESYKPFLKG NRKLDIGHQQ FIANCSKVNI GASKSHDLYA 180 EMVGGVENVG ATQQDCKNYR RELLAYMQGA DAQMLISKYL DLKSDYDDMY FEYEANENDQ 240 LARVFWADGM ARKQYSVFGD VVSFDATYKT NRYSLVFVPF TGIDHHKKCV TFAAALIARE 300 DVDSYCWILK NFRNAMGSTP PFTITDQDPA MKVAIAQEFP ETRHRYCMWH IMAKVNDKVS 360 PELAKNEVFR RELNDVVWNE SLTTAKFEVE WKAIIEKFGL IENPWLNRMY DERASWIPAC 420 FEGVFMGGLL RTTSRSEAEN RIFRSNTSKH ICKEICAGCF DCRVRGVTPG EAGNTYEVED 480 EHYVRYTVFV EHGTRTTTCE CRMYIRIGLL CSHAFAVLIY DRNEDIPPNI SHPVGHEPH

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MEEGGKIQHC VMDESQNGTS IWFTECDPSI KPAVDQVFDT LEDGIAYYKT YASIIGFDVR  60
KSSDIKNRYG IILKKKLVCN REGYKDAKPD TTAGQNTTTQ TKRRRPSNRV GCMARIVFRR  120
NSKGRYVVKK FEEGHTHCLC EESYKPFLKG NRKLDIGHQQ FIANCSKVNI GASKSHDLYA  180
EMVGGVENVG ATQQDCKNYR RELLAYMQGA DAQMLISKYL DLKSDYDDMY FEYEANENDQ  240
LARVFWADGM ARKQYSVFGD VVSFDATYKT NRYSLVFVPF TGIDHHKKCV TFAAALIARE  300
DVDSYCWILK NFRNAMGSTP PFTITDQDPA MKVAIAQEFP ETRHRYCMWH IMAKVNDKVS  360
PELAKNEVFR RELNDVVWNE SLTTAKFEVE WKAIIEKFGL IENPWLNRMY DERASWIPAC  420
FEGVFMGGLL RTTSRSEAEN RIFRSNTSKH ICKEICAGCF DCRVRGVTPG EAGNTYEVED  480
EHYVRYTVFV EHGTRTTTCE CRMYIRIGLL CSHAFAVLIY DRNEDIPPNI SHPVGHEPH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-65	FAR1 family protein