PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161905.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 712aa MW: 81334.5 Da PI: 7.253

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161905.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.9	9.4e-20	71	157	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA++vGFsvrk +++ + ++++ ++ f+Csk g++ + + + ++ tr gC a+++ +dg w vtk ++ HnHel+ XP_019161905.1 71 LYNNYAYRVGFSVRKGNQRCKVYSKTVQMKMFMCSKAGFKVKANAG--VRAYSKIDTRSGCGACVQFDVGEDGLWTVTKHVKVHNHELC 157 7*************************************998877..888899********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence
MDDAVDQRDE ALDQRDEAGD ELHTVPVSED VVVDSPSSDP IELEIDGSSS NPVDEDLVGV 60 VVSNGVEAYE LYNNYAYRVG FSVRKGNQRC KVYSKTVQMK MFMCSKAGFK VKANAGVRAY 120 SKIDTRSGCG ACVQFDVGED GLWTVTKHVK VHNHELCAVD KSHLLRSHRN VGDNQLLYLK 180 DLKKSGVAMA DGIRFLKHQA RGSPLVGFTN RDAYNLKRQS TESDFFFDFE VDCDSRLCSF 240 FWRDGRMRQD YELFGDLLVH DTTYRTNKYD MICGPFVGMN HHCMNVMFGC GFLMNERIES 300 FVWLFRAFLR SMNGKCPQTI MTDQCASMAA AICQVFPTSR HRLCIWHIGE NSKKHIKALR 360 NNKDFLDMFN CVLKHTETEA EFEFYWTRLV TDYKCHKNSW IQKLYDCREK WCPAFNKDYF 420 SGGILSSQRS ETTNHSISRR LSKTAGLCDF YSSFVSVTSE WRSKENGEDF RCTQGVPNMM 480 MEHMKLLLHA REVYTIEIYF LFEEQFMKGN ACHQEMVLNE GCQFKYHVWR PDIDIIRHEV 540 SFKLSTLDIS CSCKLISELG ILCCHCLRIL HIHCVSSIPN KYIMKRWTKK VADGRDVNTG 600 SMFCRAGVPP SIWVVEICRK FQRLISSSQD NSVTRQFCDE AVEEAKKKKY SAARGRRSAA 660 NKVASSTKGA VQSLVLESLS EIAGDGYLVH PSSGSSEFCQ YNNDVDDNAV VD

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence

MDDAVDQRDE ALDQRDEAGD ELHTVPVSED VVVDSPSSDP IELEIDGSSS NPVDEDLVGV  60
VVSNGVEAYE LYNNYAYRVG FSVRKGNQRC KVYSKTVQMK MFMCSKAGFK VKANAGVRAY  120
SKIDTRSGCG ACVQFDVGED GLWTVTKHVK VHNHELCAVD KSHLLRSHRN VGDNQLLYLK  180
DLKKSGVAMA DGIRFLKHQA RGSPLVGFTN RDAYNLKRQS TESDFFFDFE VDCDSRLCSF  240
FWRDGRMRQD YELFGDLLVH DTTYRTNKYD MICGPFVGMN HHCMNVMFGC GFLMNERIES  300
FVWLFRAFLR SMNGKCPQTI MTDQCASMAA AICQVFPTSR HRLCIWHIGE NSKKHIKALR  360
NNKDFLDMFN CVLKHTETEA EFEFYWTRLV TDYKCHKNSW IQKLYDCREK WCPAFNKDYF  420
SGGILSSQRS ETTNHSISRR LSKTAGLCDF YSSFVSVTSE WRSKENGEDF RCTQGVPNMM  480
MEHMKLLLHA REVYTIEIYF LFEEQFMKGN ACHQEMVLNE GCQFKYHVWR PDIDIIRHEV  540
SFKLSTLDIS CSCKLISELG ILCCHCLRIL HIHCVSSIPN KYIMKRWTKK VADGRDVNTG  600
SMFCRAGVPP SIWVVEICRK FQRLISSSQD NSVTRQFCDE AVEEAKKKKY SAARGRRSAA  660
NKVASSTKGA VQSLVLESLS EIAGDGYLVH PSSGSSEFCQ YNNDVDDNAV VD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-74	FAR1 family protein