PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019161679.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 775aa    MW: 87452.9 Da    PI: 6.0216
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019161679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.41.4e-1144027721373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+av+++d + a++lL+++++++sp gd  qRla +f+ +L+arla+++s++ykal  ++ts    s+ l+a++l+   +P+ k+s 
  XP_019161679.1 402 LRTLLITCAQAVAADDRRGANELLKQIRQHSSPFGDGSQRLANCFADGLEARLAGTGSQIYKALVNKRTS---ASDYLKAYHLYLASCPFRKISC 493
                     6789************************************************************999998...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++ N++     +++ rvHiiDf+i +G+QWp+L+q +a+R++gpp++RiTg++ p++g   +e++eetg+rLa++A++++vpfe+n+ +ak++e+
  XP_019161679.1 494 FASNKTTIIKSANSMRVHIIDFGILYGFQWPTLIQRIADRDGGPPKVRITGIEFPQPGfrPAERIEETGRRLADYAKSFNVPFEYNA-IAKKWET 587
                     ******99999**********************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L+++++E l+Vn+ ++ ++l+de+v  e  r+ vL+l+++++P+++++   +  ++++ F++rf eal ++salfd+le+++pr+  er+
  XP_019161679.1 588 ITLEDLKLDKDEFLVVNCLYRFKNLHDETVLAEGSRTLVLNLIRKINPDIFIHGIVNGAYSAPFFVTRFREALFHFSALFDMLETNVPRDIPERM 682
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +Ere++gre+ n+ aceg er+er et+++W+ r  +aGF+++p+ + ++++a+  +r+ + + + ++e+ ++l+lgWk+r+++++S+W
  XP_019161679.1 683 LIEREIFGREALNIMACEGWERVERPETYKQWQVRNLRAGFTQIPFANLIMNKARDKVRTGYHKDFVIDEDGQWLLLGWKGRTIYAISCW 772
                     ************************************************************99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    
MDPRLYGFSG SWNGVGVGSQ SLPFFPDPPV SNRFNFEDVY QDRELIDGPR TDNSLGGGHN  60
FEGSHDPLSR NVALTSNQDD YEDDDFSDAD LRYINQILME EEMEDKTYML QESLELQAKE  120
RSFYEALGKK YPPTPERNPS LVHQISSSRG DYEAENHQIY ITNSGPGPGS SSIINQSNGS  180
LGEYESENHH NYYYITGSNE GSSYLIDPGS INVTGDYISP YLHGFSVPNG SNSSVSSSNS  240
FNNRVDGFVE SPVSSFCIPN IYSESQPIWN FKKGVEEGNK FLPTNDKLLA SFDANQLVTE  300
EPTRETSEKS LRVRKNPHRE DLEDQRSSKQ AAIFAESTIR SEEFDIVLLH SMGKGEEALA  360
AYRQNLQSAI GKKIQQNGNS KGPGGGKGRG KKQNGKRDVI DLRTLLITCA QAVAADDRRG  420
ANELLKQIRQ HSSPFGDGSQ RLANCFADGL EARLAGTGSQ IYKALVNKRT SASDYLKAYH  480
LYLASCPFRK ISCFASNKTT IIKSANSMRV HIIDFGILYG FQWPTLIQRI ADRDGGPPKV  540
RITGIEFPQP GFRPAERIEE TGRRLADYAK SFNVPFEYNA IAKKWETITL EDLKLDKDEF  600
LVVNCLYRFK NLHDETVLAE GSRTLVLNLI RKINPDIFIH GIVNGAYSAP FFVTRFREAL  660
FHFSALFDML ETNVPRDIPE RMLIEREIFG REALNIMACE GWERVERPET YKQWQVRNLR  720
AGFTQIPFAN LIMNKARDKV RTGYHKDFVI DEDGQWLLLG WKGRTIYAIS CWVPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein