PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019161534.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 312aa    MW: 34802.7 Da    PI: 8.6983
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019161534.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.4e-092569345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E + + +a +++ ++   +W+++a++++ g+t  +++  + 
   XP_019161534.1 25 KWTPAENKAFENALALYDKDtpdRWEKVAEMVP-GKTVVDVIRQYK 69
                     8********************************.******998886 PP
2Myb_DNA-binding44.43.8e-14142186347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_019161534.1 142 PWTEEEHRLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 186
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MEILSPSSSY LSNSSWIVEE SKSTKWTPAE NKAFENALAL YDKDTPDRWE KVAEMVPGKT  60
VVDVIRQYKE LEDDVSSIEA GLMDMPVPVY TSSSSPSPSP FTLDWGNSRG FDAQRQPFAA  120
AAGGKRPSSN RTPEQERKKG VPWTEEEHRL FLMGLKKYGK GDWRNISRNF VITRTPTQVA  180
SHAQKYFIRQ LSGGKDKRRA SIHDITTVNL NDNNQTLSPE NNNNNNKPPS PPDPPAAAVH  240
SHHKMPFQWS QQVSNGAAVM GSFSTAPDNI FFAPSPYGLG SYGMNKVQNH EIYFGQQNMG  300
LQIQSAQQFH PA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.19e-95MYB family protein