PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161311.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 301aa MW: 34977.9 Da PI: 5.8375

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161311.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.2e-21	71	124	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q+++Le+ F ++++ ae+r+eLA++lgL rqV vWFqNrRa++k XP_019161311.1 71 KKRRLTSQQVDVLERSFSGEKKVEAERRKELASNLGLHPRQVAVWFQNRRARWK 124 56689************************************************9 PP
2	HD-ZIP_I/II	114.8	5.2e-37	71	161	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl+++qv +LE+sF+ e+k+e er++ela++Lgl+prqvavWFqnrRAR+k+kqlE+dy+ Lk+++d l ++ + + k++++L++e++ XP_019161311.1 71 KKRRLTSQQVDVLERSFSGEKKVEAERRKELASNLGLHPRQVAVWFQNRRARWKAKQLERDYDELKSSHDYLLSHYNFILKQNQKLKAEVT 161 9**************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MERRMEESGR FFFNPSSHAD VLFLGKADPL FPGGSWSATK MEESLKRRAS CMFSGPQSDE 60 EYYEEQSSSD KKRRLTSQQV DVLERSFSGE KKVEAERRKE LASNLGLHPR QVAVWFQNRR 120 ARWKAKQLER DYDELKSSHD YLLSHYNFIL KQNQKLKAEV TNSTVLATTI SITKYAINVL 180 KVNLLSKKLE GNCKEVDDDD EGKNAPPSRM KAEKKCDFTR IHSSIGHRDK IPEEEYGNPK 240 QELLMDNYYY YCVCGSGNTY NNLHNIDYEE EEEDMDHHVC NSTPHAQTTT DDDEPLGWFW 300 S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-46	HD-ZIP family protein