PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161088.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 418aa MW: 44796.4 Da PI: 4.7611

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	9.1e-17	59	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G+++W++Iar + gR++k+c++rw + XP_019161088.1 59 KGPWSPEEDAILSRLVSNFGPRNWSLIARGIS-GRSGKSCRLRWCNQ 104 79****************************.*********985 PP
2	Myb_DNA-binding	57.7	2.7e-18	111	155	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ XP_019161088.1 111 RKPFTEEEDRIILQAHAVHGNK-WASIAKLLP-GRTDNAIKNHWNST 155 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MELDTAELED AAVSAGDATV ESGAGGGTGE EDDEVVVLED GSGNSDQMSD KKAAADRVKG 60 PWSPEEDAIL SRLVSNFGPR NWSLIARGIS GRSGKSCRLR WCNQLDPAVK RKPFTEEEDR 120 IILQAHAVHG NKWASIAKLL PGRTDNAIKN HWNSTLRRHY AALGKLKGEF GNMGEDVSPE 180 RSKASSEDTQ SCGDVNSLKA SEGKDFFSVE NPNDVPSEDK NQDAVQSIEE PREPPTLFRP 240 VARVSAFNVY NSLDGPEALF SVPRVTPLQG SSLQATSNPN IGISKLLEGA FGEQLVPCQC 300 GHGCCGNSPQ GNHNSSLLGP EFVDYSESPS FPIHELAALA TDISNVAWRN SGLENGSINL 360 FSNSASSVMC GASHAQGESL EEMRKSDHHS QLEKGKALMA DPASTPISRQ PLQVNTKT

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MELDTAELED AAVSAGDATV ESGAGGGTGE EDDEVVVLED GSGNSDQMSD KKAAADRVKG  60
PWSPEEDAIL SRLVSNFGPR NWSLIARGIS GRSGKSCRLR WCNQLDPAVK RKPFTEEEDR  120
IILQAHAVHG NKWASIAKLL PGRTDNAIKN HWNSTLRRHY AALGKLKGEF GNMGEDVSPE  180
RSKASSEDTQ SCGDVNSLKA SEGKDFFSVE NPNDVPSEDK NQDAVQSIEE PREPPTLFRP  240
VARVSAFNVY NSLDGPEALF SVPRVTPLQG SSLQATSNPN IGISKLLEGA FGEQLVPCQC  300
GHGCCGNSPQ GNHNSSLLGP EFVDYSESPS FPIHELAALA TDISNVAWRN SGLENGSINL  360
FSNSASSVMC GASHAQGESL EEMRKSDHHS QLEKGKALMA DPASTPISRQ PLQVNTKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	4e-96	MYB family protein