PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019161076.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 316aa    MW: 35738.9 Da    PI: 4.7606
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019161076.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.3e-131964146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W  eEde l++ v+++G+++W++I ++  + Rt+k+c++rw +
   XP_019161076.1 19 KGPWKVEEDEVLLNHVNKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 64
                     79*************************8887799**********87 PP
2Myb_DNA-binding45.91.3e-1475114344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++++eE+ + +d+ +q+G++ W++Ia +++ gRt++++k++w
   XP_019161076.1  75 KFSAEEERIVIDLQAQFGNK-WARIATYLP-GRTDNDVKNFW 114
                      79******************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MEGRSWCNGE KNEFGDIKKG PWKVEEDEVL LNHVNKYGPR DWSSIRSKGL LQRTGKSCRL  60
RWVNKLRPNL KNGVKFSAEE ERIVIDLQAQ FGNKWARIAT YLPGRTDNDV KNFWSSRQKR  120
LARILHNSTP QSSKSWGDNN SGNSVKEVPA LPDVPSLEEP KFRSSTNEES LSKHQSCSSS  180
YIENFEAIPM LDLMNPTSFT FEPNLLQLEY AQCETKPFHG SQPQLLPFPQ IPQVQTTDFS  240
LPLEGQDFAS RLGDLSFLDA FGNASGPEPE TSCEGVVVKQ ETDDVVINPL SPDSFIDDFS  300
IDMFDHIEPL PSPSDW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-71MYB family protein