PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161019.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 618aa MW: 69751.8 Da PI: 8.1244

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.7e-21	66	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn YA++vGFsvrk +++++ +++i +++f C k g++++ ++ + ++ rtgC a ++ dg w vtk +eHnHel++ XP_019161019.1 66 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKRFFCAKAGYKQKPNSG--VKLYSKIDMRTGCGAFVQFDVGGDGMWTVTKHLKEHNHELCS 153 7**************************************99887..888999********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence
MEETPVRGED STDMISAIPV NEDCVGDSIS NDQAELNIDI DGSSSSPVDE DLVGVVVRNV 60 DEAFELYNGY AYRVGFSVRK GQQRYKASTK SIQMKRFFCA KAGYKQKPNS GVKLYSKIDM 120 RTGCGAFVQF DVGGDGMWTV TKHLKEHNHE LCSFGKSHLL RSHRRVGNNQ LEYLKDMKSS 180 GVALADGMRF LKHQSGGSPL VGFTNRDAYN SMASVSLKCL DGSDSNSLIE IFRRRQSNEA 240 DFFFDFEHIK ALRNHKDFLD MFNCVLKYTE TEAEFEVYWT RMVTKYNCHK NTWLEKLYDC 300 REKWCPAFNK DYFSGGILSS QRSESTNHAI SRRLSKTAGL CDFYSSFVSV ISEWRSKENS 360 EDFRCSQGVP AMMMDHVKLL SHARECKYHV WRPDIDIIRH EVTFKAINLD ICCSCKLFSE 420 LGILCCHCLR ILHVHCVSNI PDKYILKRWT KKVVEGRNVD IASVFYNGGV PSSIWAVEIS 480 RKFQRLIVSS QDNSVARQFC DEAVENARKN IEAEIGDVNT EEGVVSSSSG IVQDPSSRRG 540 KGVRNKRSSS VIEKKYNAAR GRKSAANKLA SITKGSVQSL VLENISEIAR DGYLVHPSTG 600 GSQFVHFNKN VDHDVAID

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence

MEETPVRGED STDMISAIPV NEDCVGDSIS NDQAELNIDI DGSSSSPVDE DLVGVVVRNV  60
DEAFELYNGY AYRVGFSVRK GQQRYKASTK SIQMKRFFCA KAGYKQKPNS GVKLYSKIDM  120
RTGCGAFVQF DVGGDGMWTV TKHLKEHNHE LCSFGKSHLL RSHRRVGNNQ LEYLKDMKSS  180
GVALADGMRF LKHQSGGSPL VGFTNRDAYN SMASVSLKCL DGSDSNSLIE IFRRRQSNEA  240
DFFFDFEHIK ALRNHKDFLD MFNCVLKYTE TEAEFEVYWT RMVTKYNCHK NTWLEKLYDC  300
REKWCPAFNK DYFSGGILSS QRSESTNHAI SRRLSKTAGL CDFYSSFVSV ISEWRSKENS  360
EDFRCSQGVP AMMMDHVKLL SHARECKYHV WRPDIDIIRH EVTFKAINLD ICCSCKLFSE  420
LGILCCHCLR ILHVHCVSNI PDKYILKRWT KKVVEGRNVD IASVFYNGGV PSSIWAVEIS  480
RKFQRLIVSS QDNSVARQFC DEAVENARKN IEAEIGDVNT EEGVVSSSSG IVQDPSSRRG  540
KGVRNKRSSS VIEKKYNAAR GRKSAANKLA SITKGSVQSL VLENISEIAR DGYLVHPSTG  600
GSQFVHFNKN VDHDVAID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	4e-26	FAR1 family protein