PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161018.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 433aa MW: 48824.8 Da PI: 9.3694

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.9	2.1e-10	2	60	31	91
FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++f C k g++++ ++ + ++ rtgC a ++ dg w vtk +eHnHel++ XP_019161018.1 2 KRFFCAKAGYKQKPNSG--VKLYSKIDMRTGCGAFVQFDVGGDGMWTVTKHLKEHNHELCS 60 79*******999887..888999********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MKRFFCAKAG YKQKPNSGVK LYSKIDMRTG CGAFVQFDVG GDGMWTVTKH LKEHNHELCS 60 FGKSHLLRSH RRVGNNQLEY LKDMKSSGVA LADGMRMVTK YNCHKNTWLE KLYDCREKWC 120 PAFNKDYFSG GILSSQRSES TNHAISRRLS KTAGLCDFYS SFVSVISEWR SKENSEDFRC 180 SQGVPAMMMD HVKLLSHARE CKYHVWRPDI DIIRHEVTFK AINLDICCSC KLFSELGILC 240 CHCLRILHVH CVSNIPDKYI LKRWTKKVVE GRNVDIASVF YNGGVPSSIW AVEISRKFQR 300 LIVSSQDNSV ARQFCDEAVE NARKNIEAEI GDVNTEEGVV SSSSGIVQDP SSRRGKGVRN 360 KRSSSVIEKK YNAARGRKSA ANKLASITKG SVQSLVLENI SEIARDGYLV HPSTGGSQFV 420 HFNKNVDHDV AID

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MKRFFCAKAG YKQKPNSGVK LYSKIDMRTG CGAFVQFDVG GDGMWTVTKH LKEHNHELCS  60
FGKSHLLRSH RRVGNNQLEY LKDMKSSGVA LADGMRMVTK YNCHKNTWLE KLYDCREKWC  120
PAFNKDYFSG GILSSQRSES TNHAISRRLS KTAGLCDFYS SFVSVISEWR SKENSEDFRC  180
SQGVPAMMMD HVKLLSHARE CKYHVWRPDI DIIRHEVTFK AINLDICCSC KLFSELGILC  240
CHCLRILHVH CVSNIPDKYI LKRWTKKVVE GRNVDIASVF YNGGVPSSIW AVEISRKFQR  300
LIVSSQDNSV ARQFCDEAVE NARKNIEAEI GDVNTEEGVV SSSSGIVQDP SSRRGKGVRN  360
KRSSSVIEKK YNAARGRKSA ANKLASITKG SVQSLVLENI SEIARDGYLV HPSTGGSQFV  420
HFNKNVDHDV AID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	4e-20	FAR1 family protein