PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161007.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 725aa MW: 82012 Da PI: 8.4625

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161007.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.2	7.2e-20	142	228	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA ++GFsvrk k+++ +++++ ++f Csk g++ +++++ ++ tr+ trtgC a + + +g+w+vtk ++eHnHe + XP_019161007.1 142 LYNDYAFRMGFSVRKGKQYYFAGSQNVKIKKFHCSKFGFKCKSDNS--VRSYTRVDTRTGCLAFCQFDVDPNGNWVVTKHVKEHNHEPC 228 6**************************************99988..8999********************************855 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MMDASKNLVL AGPSSTLSWN YRGFGGPRTV RELIGFVFMK RPNFVLLMET KARSMQLERI 60 GVRLGFEGDL NAMVNVDSTY PIGVDFRHIN PVDVTFGDAV DESLPNVVNA SSSNAIDESS 120 SIPVNQELLG LSVHSIEEAF TLYNDYAFRM GFSVRKGKQY YFAGSQNVKI KKFHCSKFGF 180 KCKSDNSVRS YTRVDTRTGC LAFCQFDVDP NGNWVVTKHV KEHNHEPCPS SKSYMLRSHR 240 TIGIDQLSYL KDLKRSGVAV ADDIRFLKRQ SGGSPFVGFT QRDAYNNLLT DSIKSLDGTD 300 SNSLIDIFRQ RQINEPDFFY DFETFLRAMG GKFPQTIMTD QCAAMSAAIS QNENFRMVSE 360 YKCHGNSRLE KLYDIREKWC PAFNKDYFSG GILSSQRSET TNHSVSRRLS KTAGLCDFYN 420 SFANVVHEWR SKESGEDLRC SQGVPTMAMD HVKLLSHARG VYTIEVYYLF EEQFLKGGAC 480 HQEIVVSYGD ELKYHVWRPD IDIIRHEVCF NPKDMKICCS CKFFSEMGIL CSHCLRILNI 540 NCVGTIPDQY ICQRWTKRVV EDRIMDISSG PNMSTVASSV WVIQMGRKFQ RLVISSQDNY 600 EAREVCETGF DDFRRRIEAK VGPIIVDDFE TPLPSGVIQN PVRRGVKGER NRRLVSTMQK 660 KHNQARARRN YSKAVEENTK AAAQSSVQQV VSEIVGSGYL VHSSGSSSSK LVCVRSGSQN 720 ISNDN

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MMDASKNLVL AGPSSTLSWN YRGFGGPRTV RELIGFVFMK RPNFVLLMET KARSMQLERI  60
GVRLGFEGDL NAMVNVDSTY PIGVDFRHIN PVDVTFGDAV DESLPNVVNA SSSNAIDESS  120
SIPVNQELLG LSVHSIEEAF TLYNDYAFRM GFSVRKGKQY YFAGSQNVKI KKFHCSKFGF  180
KCKSDNSVRS YTRVDTRTGC LAFCQFDVDP NGNWVVTKHV KEHNHEPCPS SKSYMLRSHR  240
TIGIDQLSYL KDLKRSGVAV ADDIRFLKRQ SGGSPFVGFT QRDAYNNLLT DSIKSLDGTD  300
SNSLIDIFRQ RQINEPDFFY DFETFLRAMG GKFPQTIMTD QCAAMSAAIS QNENFRMVSE  360
YKCHGNSRLE KLYDIREKWC PAFNKDYFSG GILSSQRSET TNHSVSRRLS KTAGLCDFYN  420
SFANVVHEWR SKESGEDLRC SQGVPTMAMD HVKLLSHARG VYTIEVYYLF EEQFLKGGAC  480
HQEIVVSYGD ELKYHVWRPD IDIIRHEVCF NPKDMKICCS CKFFSEMGIL CSHCLRILNI  540
NCVGTIPDQY ICQRWTKRVV EDRIMDISSG PNMSTVASSV WVIQMGRKFQ RLVISSQDNY  600
EAREVCETGF DDFRRRIEAK VGPIIVDDFE TPLPSGVIQN PVRRGVKGER NRRLVSTMQK  660
KHNQARARRN YSKAVEENTK AAAQSSVQQV VSEIVGSGYL VHSSGSSSSK LVCVRSGSQN  720
ISNDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	2e-25	FAR1 family protein