PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160836.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 825aa MW: 94968.7 Da PI: 7.4301

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.2	5.1e-27	66	153	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk+++dg+w+++++ ++HnHel p XP_019160836.1 66 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSC---SSRRPSVKKTDCKASMHVKRKRDGNWYIHEFIKDHNHELLP 153 5*************************************9999877...7788889*****************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence
MINSGDSMQS SHQMVAHMGD DVEEAQENRD GGMSHSPKRA IVASQGNTDL EPHDGIEFES 60 HEAAYSFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD SCSSRRPSVK 120 KTDCKASMHV KRKRDGNWYI HEFIKDHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS 180 ERTRKMYVEM SRQTGGIRDV DFTGNSLSYQ FDRGRYLGLE EGDAQVILEY FMHIQKENPY 240 FFYAVDLNED QRLRNLFWVD AKSRKDFVNF SDVVFFDTNY IKSNEKMPFA LFVGVNHHFQ 300 PILLGCALVA DESKPMFVWL MKTWLRAMGG QPPKVIITDQ DKALKAAAEE VFPSSCHCFA 360 LWHVIERITE ILSHVIKQHD NFMGKFTKCI FKSLTDEQFD MRWWKMVTRF ELQENEWIRL 420 LYEDRKKWVP TFMRDTFLAG MSTSQRSESL ISFFDKYIHK KISLKEFVKQ YGIILQTRYE 480 DEAIADFDTL HKQPALKSPS PWEKQMSTIY THAIFKKFQI EVLGVVGCHP KREGVNGENV 540 TFRVDDCEKD DNFMVTWNEA KLEVSCSCLL FEYKGFLCRH AMIVLQMCGL SSIPPHYILK 600 RWTKDAKSRH WMIEGTERVQ TRVQRYNDLC KRAIELGEEG SLSELSYSIA FRVLDEALKN 660 CVNVNNRTGA ACSSNAVVLR DIEEDTQGSH TTKISKKKNV TKKRKVQSEP GLAITDAQGS 720 LQQMDNLNSD GMTLSGYYGT QHNVQGLIQL NLMEPPNDAY YVNPQNIQGL GQLTSITPSH 780 DGFFGSQQSM PGLGHLDYRP SFGYSLQDEP NMRSAQLHGD NARHS

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence

MINSGDSMQS SHQMVAHMGD DVEEAQENRD GGMSHSPKRA IVASQGNTDL EPHDGIEFES  60
HEAAYSFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD SCSSRRPSVK  120
KTDCKASMHV KRKRDGNWYI HEFIKDHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS  180
ERTRKMYVEM SRQTGGIRDV DFTGNSLSYQ FDRGRYLGLE EGDAQVILEY FMHIQKENPY  240
FFYAVDLNED QRLRNLFWVD AKSRKDFVNF SDVVFFDTNY IKSNEKMPFA LFVGVNHHFQ  300
PILLGCALVA DESKPMFVWL MKTWLRAMGG QPPKVIITDQ DKALKAAAEE VFPSSCHCFA  360
LWHVIERITE ILSHVIKQHD NFMGKFTKCI FKSLTDEQFD MRWWKMVTRF ELQENEWIRL  420
LYEDRKKWVP TFMRDTFLAG MSTSQRSESL ISFFDKYIHK KISLKEFVKQ YGIILQTRYE  480
DEAIADFDTL HKQPALKSPS PWEKQMSTIY THAIFKKFQI EVLGVVGCHP KREGVNGENV  540
TFRVDDCEKD DNFMVTWNEA KLEVSCSCLL FEYKGFLCRH AMIVLQMCGL SSIPPHYILK  600
RWTKDAKSRH WMIEGTERVQ TRVQRYNDLC KRAIELGEEG SLSELSYSIA FRVLDEALKN  660
CVNVNNRTGA ACSSNAVVLR DIEEDTQGSH TTKISKKKNV TKKRKVQSEP GLAITDAQGS  720
LQQMDNLNSD GMTLSGYYGT QHNVQGLIQL NLMEPPNDAY YVNPQNIQGL GQLTSITPSH  780
DGFFGSQQSM PGLGHLDYRP SFGYSLQDEP NMRSAQLHGD NARHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein