PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160779.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 742aa MW: 84922.7 Da PI: 8.5858

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63	8.4e-20	64	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA +vGF++r s+ r+g+ t+++ vC++eg++++ ++ ++ +r+r+++rtgC+a++ k + ++vt++ + XP_019160779.1 64 EFYNHYAAKVGFDTRSSSVVIA-RDGTKTQKQIVCNREGFKNTGAQHchsqssanagegPSRPKRRRVSNRTGCRARIIFKYIGAAGYQVTTFIE 157 6************9998887.8888************999999***999889999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019160779.1 158 KHNHSMS 164 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence
MEEFDRVPSD FQSTNNPSLS PSSSSNGHTL TISPGMTQYW TPHCEDEIKP AVNMIFKTLD 60 AGIEFYNHYA AKVGFDTRSS SVVIARDGTK TQKQIVCNRE GFKNTGAQHC HSQSSANAGE 120 GPSRPKRRRV SNRTGCRARI IFKYIGAAGY QVTTFIEKHN HSMSSVLARQ FLKGNRNISS 180 VHQKFILNCA KVNIGPSKSH GLYSHIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQIQV 240 HNLIKKQEMC PAFAFDYEVD EDEQMSRLLW ADPMSKKNFS AFGDVISFDA TYSTNRYNLA 300 MGIEPRIIVT DQDPAMKVVI PTVFKQARHR YCMWHIMCKV GEKVGPTLNK DEEFRNKLNS 360 IVWTSSLEPP DFEKQWRELM EKYNLVEHNW FTTMFEARKH WIPTYFRDGF MGGLLRTTSR 420 SESENYTYSR FTGPQSSLVE FMMNFDSALK SQRNTNAKLN SDNEGYNPDM KTPLGIEKHA 480 SIVYTITVFY QVQEEICAYC FKCMVLSVRE DGGMLHYDIM DGKNKRFTVV HNVNDHKAKC 540 SCKMFEMVGL LCRHIFVVFR DLEKIPLKYV VNRWTKDASL KATFEIDGVI YDQNGPKDEK 600 KMLLNKKQLL LSGKEKLSPQ HSRRAVIESY CGSTEISEIN ILPPKHAKNK GSGKRIKSSK 660 ELAMEKEEGR RCNFCGVRGD HHDTRTCPLN PKNKDKQKAS HTLPACHNDK LSANDDVWKL 720 DDELEEENDE LCFRFRMCCF CS

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence

MEEFDRVPSD FQSTNNPSLS PSSSSNGHTL TISPGMTQYW TPHCEDEIKP AVNMIFKTLD  60
AGIEFYNHYA AKVGFDTRSS SVVIARDGTK TQKQIVCNRE GFKNTGAQHC HSQSSANAGE  120
GPSRPKRRRV SNRTGCRARI IFKYIGAAGY QVTTFIEKHN HSMSSVLARQ FLKGNRNISS  180
VHQKFILNCA KVNIGPSKSH GLYSHIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQIQV  240
HNLIKKQEMC PAFAFDYEVD EDEQMSRLLW ADPMSKKNFS AFGDVISFDA TYSTNRYNLA  300
MGIEPRIIVT DQDPAMKVVI PTVFKQARHR YCMWHIMCKV GEKVGPTLNK DEEFRNKLNS  360
IVWTSSLEPP DFEKQWRELM EKYNLVEHNW FTTMFEARKH WIPTYFRDGF MGGLLRTTSR  420
SESENYTYSR FTGPQSSLVE FMMNFDSALK SQRNTNAKLN SDNEGYNPDM KTPLGIEKHA  480
SIVYTITVFY QVQEEICAYC FKCMVLSVRE DGGMLHYDIM DGKNKRFTVV HNVNDHKAKC  540
SCKMFEMVGL LCRHIFVVFR DLEKIPLKYV VNRWTKDASL KATFEIDGVI YDQNGPKDEK  600
KMLLNKKQLL LSGKEKLSPQ HSRRAVIESY CGSTEISEIN ILPPKHAKNK GSGKRIKSSK  660
ELAMEKEEGR RCNFCGVRGD HHDTRTCPLN PKNKDKQKAS HTLPACHNDK LSANDDVWKL  720
DDELEEENDE LCFRFRMCCF CS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-83	FAR1 family protein