PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160066.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 710aa MW: 80584.9 Da PI: 8.2613

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160066.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.1	3e-13	75	154	2	72
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkek 72 fY +YA+++GFsvr + k+ r+g+it+r + Cs+eg + +++ +++rr+r+++r++C+a++ ++++k XP_019160066.1 75 FYMTYARTCGFSVRHGTPKRG-RDGKITTRYLLCSREGVKGGGRSTpkpvegasggPSTQRRRRVSNRVNCNARICITQDK 154 9*************99887.8889*********9998888999**999999**************9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence
MGSPAPATVG DYAVTFGMPP LQPPLGDPAD DEGQESVGTG GYISIPVKYW WPTVDCAITP 60 VVGYRFKTVA EGVHFYMTYA RTCGFSVRHG TPKRGRDGKI TTRYLLCSRE GVKGGGRSTP 120 KPVEGASGGP STQRRRRVSN RVNCNARICI TQDKGFRLYK ESVGSFANVG ATDTEFHNFK 180 RDLQSYVADK DREMIIAKFK QKHDVCENFF FDYYLDEGNH LARLFWADHT GRQNFLSFGD 240 VISFDATYGT NRYSLVFIPF TGVDHHKRCI TFAGGLLTRE DTDSYVWLLE GFKTAMGNSP 300 SCVVTDEDPA MKSAIARVLP ECRHRYCTWH IMTKVSEKSG PELSKDQTFR KQLNNIVWNE 360 TISIGDFETQ WQLLMEKYNL TGHRWFTKLY TERWFWIPSY FLDLLMRGVL RTTSHSEAEN 420 NAYGKSTRPH CSLVEFYVQF ESVLETQWHR QSKLNAESEG SLPEFKTPLA LERHTVQVFT 480 VTVFYELQLE IEAAYFYCRV VGIRADGECI RYDIKGEYNA VHTVEYTPSL SIASCSCKLF 540 ERLRFVCQHM FLVFRDAEMV SLPSRYIAAR WCKQEGLASW CARCSDCPPL ETMPSQLWTE 600 IHNCAVMVGS NKVRQTRMLQ VIKELRDEFL GDGMGVDLPK GNDVVIAALC GVEPPMSIII 660 KPPSQAKNKG TSKRIKSQRE LAIERSGKAC RKCGVCGEYT HHNARSCPLK

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence

MGSPAPATVG DYAVTFGMPP LQPPLGDPAD DEGQESVGTG GYISIPVKYW WPTVDCAITP  60
VVGYRFKTVA EGVHFYMTYA RTCGFSVRHG TPKRGRDGKI TTRYLLCSRE GVKGGGRSTP  120
KPVEGASGGP STQRRRRVSN RVNCNARICI TQDKGFRLYK ESVGSFANVG ATDTEFHNFK  180
RDLQSYVADK DREMIIAKFK QKHDVCENFF FDYYLDEGNH LARLFWADHT GRQNFLSFGD  240
VISFDATYGT NRYSLVFIPF TGVDHHKRCI TFAGGLLTRE DTDSYVWLLE GFKTAMGNSP  300
SCVVTDEDPA MKSAIARVLP ECRHRYCTWH IMTKVSEKSG PELSKDQTFR KQLNNIVWNE  360
TISIGDFETQ WQLLMEKYNL TGHRWFTKLY TERWFWIPSY FLDLLMRGVL RTTSHSEAEN  420
NAYGKSTRPH CSLVEFYVQF ESVLETQWHR QSKLNAESEG SLPEFKTPLA LERHTVQVFT  480
VTVFYELQLE IEAAYFYCRV VGIRADGECI RYDIKGEYNA VHTVEYTPSL SIASCSCKLF  540
ERLRFVCQHM FLVFRDAEMV SLPSRYIAAR WCKQEGLASW CARCSDCPPL ETMPSQLWTE  600
IHNCAVMVGS NKVRQTRMLQ VIKELRDEFL GDGMGVDLPK GNDVVIAALC GVEPPMSIII  660
KPPSQAKNKG TSKRIKSQRE LAIERSGKAC RKCGVCGEYT HHNARSCPLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-69	FAR1 family protein