PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159883.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 776aa MW: 84943.4 Da PI: 6.5761

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.7e-16	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_019159883.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence
MDTYSSGEEL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KLEKEALIKG VPIGQALDIE IPPPRPKRKP INPYPRKTVA GTPTPVVGGK 120 DGKLYASDSS LCQQKEPLLE KPGGDKKLDI AKENREEVIS DVLTLFHEGP TSPSVRNRDC 180 LPTQVAPQNS CTFREFVPIV KGTNRDDASK SYVTVESKGN QEPDKLDTKQ SFQDASSCNS 240 LDMENSFPSK EKLTHGEKLD EPNQPDEVFT ENDMQAVQSC PRHVPVHILD GSLGMNTNNT 300 QDMTYHESIV HQIGGVQGHL NQFTHHASSN TSEHQSNPSR SSIHHMFPSF HPMMASNCDS 360 NDYRSSCLHI SSTFSSLIVS ALLQNPAAHA AASFAASFWP YAANFEAPAE SCTGTPGGVP 420 SRQMNSVPSM AAIAAATVAA ATAWWAAHGL LPLCSPFHTC VTCPTSSGTA VPMDACQTNV 480 ANNEREDGTP DPSLHVQQLD PGCTETLREQ LSASKPPVLC SSDSEESDGM KVNTTVTVTD 540 TEQAAIVTEL IDSNTTKNRK QVDRSSCGSN TPSSSEVETD ALEKIEKDKE DPKESPHVNH 600 TPTPTESGNR RGKNSSNPND PWKEVSEEGR IAFWALFSRE VLPQSFSPPY DLNSKVKKNS 660 EKGKLKGEQN EEKDQKGLQL EVNDKSSSSI RCSIHYGNKD KESSLSSSRF GGGNNTLTVK 720 LGEGKLKACR TGFKPYKRCS VEAKESSRIG GSSTGCQDEE KGPKRLRLGG GETSTL

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence

MDTYSSGEEL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFT KLEKEALIKG VPIGQALDIE IPPPRPKRKP INPYPRKTVA GTPTPVVGGK  120
DGKLYASDSS LCQQKEPLLE KPGGDKKLDI AKENREEVIS DVLTLFHEGP TSPSVRNRDC  180
LPTQVAPQNS CTFREFVPIV KGTNRDDASK SYVTVESKGN QEPDKLDTKQ SFQDASSCNS  240
LDMENSFPSK EKLTHGEKLD EPNQPDEVFT ENDMQAVQSC PRHVPVHILD GSLGMNTNNT  300
QDMTYHESIV HQIGGVQGHL NQFTHHASSN TSEHQSNPSR SSIHHMFPSF HPMMASNCDS  360
NDYRSSCLHI SSTFSSLIVS ALLQNPAAHA AASFAASFWP YAANFEAPAE SCTGTPGGVP  420
SRQMNSVPSM AAIAAATVAA ATAWWAAHGL LPLCSPFHTC VTCPTSSGTA VPMDACQTNV  480
ANNEREDGTP DPSLHVQQLD PGCTETLREQ LSASKPPVLC SSDSEESDGM KVNTTVTVTD  540
TEQAAIVTEL IDSNTTKNRK QVDRSSCGSN TPSSSEVETD ALEKIEKDKE DPKESPHVNH  600
TPTPTESGNR RGKNSSNPND PWKEVSEEGR IAFWALFSRE VLPQSFSPPY DLNSKVKKNS  660
EKGKLKGEQN EEKDQKGLQL EVNDKSSSSI RCSIHYGNKD KESSLSSSRF GGGNNTLTVK  720
LGEGKLKACR TGFKPYKRCS VEAKESSRIG GSSTGCQDEE KGPKRLRLGG GETSTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	4e-87	MYB_related family protein