PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159830.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 670aa MW: 73688.3 Da PI: 9.7591

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	571	620	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_019159830.1 571 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 620 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MVLQKRLDYG FNGYQVPPIP RATRSARRRS VIWRKGGDNQ MCAFELLASV AGKLLLEGES 60 SSSSKDNTSL EKVNIKKEKQ NEEGTMLERS CNRGSKERGF FISELVSQAP VLNNCSSELP 120 RSRNGILSGP SSVITTCDFS DTIALVEQLG NGEVFSSCKS GGNRVSDNVK VATDSKDGIC 180 SSEFPVLGDR KKTSTLVCSD NSVELTLSRN HVPCGSLPPA NRDDVKLGSR DDDENPLRST 240 SNKAFRPSLR MRDQRVKKLL ASKYWELNSK SSDKQHLDAD VESSFKHQRS LRDYPYKKRK 300 LYDCGSVGNS DGGKSSDGMC TSLARGYSGV KSSNGLCTTP NGDASRYCLT LPTAHSTTGQ 360 STFAVDEQAS FRPGDPHVKL KIKSFRVPEL FIEIPETATI GSLKRTVMEA VTRILGDGLC 420 VGVVFQGKKV GDDKKTLLQT GISHNNKLDA LGFTLEPNPS QDPPLLGSEA HTQPYCDTPR 480 PLKRYPAARS IAHAVVQAGP ANILNDEAGT NLINFIGSSH DLDPSRANVS LEKHAADSRA 540 LVAAPGVNLE TFAAVPVRKP KRSEAARRRI RRPFSVTEVE ALVQAVEKLG TGRWRDVKLR 600 AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLTAHAY WSQQQAKQQM 660 KQHPETCLLL

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MVLQKRLDYG FNGYQVPPIP RATRSARRRS VIWRKGGDNQ MCAFELLASV AGKLLLEGES  60
SSSSKDNTSL EKVNIKKEKQ NEEGTMLERS CNRGSKERGF FISELVSQAP VLNNCSSELP  120
RSRNGILSGP SSVITTCDFS DTIALVEQLG NGEVFSSCKS GGNRVSDNVK VATDSKDGIC  180
SSEFPVLGDR KKTSTLVCSD NSVELTLSRN HVPCGSLPPA NRDDVKLGSR DDDENPLRST  240
SNKAFRPSLR MRDQRVKKLL ASKYWELNSK SSDKQHLDAD VESSFKHQRS LRDYPYKKRK  300
LYDCGSVGNS DGGKSSDGMC TSLARGYSGV KSSNGLCTTP NGDASRYCLT LPTAHSTTGQ  360
STFAVDEQAS FRPGDPHVKL KIKSFRVPEL FIEIPETATI GSLKRTVMEA VTRILGDGLC  420
VGVVFQGKKV GDDKKTLLQT GISHNNKLDA LGFTLEPNPS QDPPLLGSEA HTQPYCDTPR  480
PLKRYPAARS IAHAVVQAGP ANILNDEAGT NLINFIGSSH DLDPSRANVS LEKHAADSRA  540
LVAAPGVNLE TFAAVPVRKP KRSEAARRRI RRPFSVTEVE ALVQAVEKLG TGRWRDVKLR  600
AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLTAHAY WSQQQAKQQM  660
KQHPETCLLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	291	300	LRDYPYKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-124	MYB_related family protein