PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159722.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 410aa MW: 46717.3 Da PI: 8.5774

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.4	3.1e-20	62	161	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA+ GF+vr+ + k+ r+g i +r + Cs++g r + + +++err+r ++r++Ckak+ ++k+++g + vt +++eH XP_019159722.1 62 EFYMNYARISGFDVRQGTLKRD-RDGVIFMRYLLCSRQGIRGGGRINrlpdrdvgrgKNRERRRRISNRVNCKAKIYLRKKRSGDFIVTVFVEEH 155 6***************9998.9999**********998888899***************************************** PP FAR1 86 nHelap 91 +H+l++ XP_019159722.1 156 SHKLCS 161 **85 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MDDEDTGCST GCATEMLPVA DVAAPGAVGL ATSHSLQWKP NVDDSILPVV GRKFRTLEEG 60 IEFYMNYARI SGFDVRQGTL KRDRDGVIFM RYLLCSRQGI RGGGRINRLP DRDVGRGKNR 120 ERRRRISNRV NCKAKIYLRK KRSGDFIVTV FVEEHSHKLC SEPSKMFMRI NRQLNVSQQA 180 FLANCVKTNI GASTGLRFCK EVAGSYGNVG ATDVEFHNFK RDLQTYVEVG DGEMIIEKFK 240 AKHEVCSDFY FDYQLDEDDR LARLFWADPS GRRAFSCYGD TISFDATYGT NRYSMVFVPF 300 TGVNNHKRCI TFGAGLLTKE DVDSYSWLLE RFKCAMGKTP LCVVTDQDPA LRVAIEEVLP 360 GSRHRFCMWH IMTKVPEKIG NELAKDEKFR NKLNAIVWNE RITSAEFEVQ

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MDDEDTGCST GCATEMLPVA DVAAPGAVGL ATSHSLQWKP NVDDSILPVV GRKFRTLEEG  60
IEFYMNYARI SGFDVRQGTL KRDRDGVIFM RYLLCSRQGI RGGGRINRLP DRDVGRGKNR  120
ERRRRISNRV NCKAKIYLRK KRSGDFIVTV FVEEHSHKLC SEPSKMFMRI NRQLNVSQQA  180
FLANCVKTNI GASTGLRFCK EVAGSYGNVG ATDVEFHNFK RDLQTYVEVG DGEMIIEKFK  240
AKHEVCSDFY FDYQLDEDDR LARLFWADPS GRRAFSCYGD TISFDATYGT NRYSMVFVPF  300
TGVNNHKRCI TFGAGLLTKE DVDSYSWLLE RFKCAMGKTP LCVVTDQDPA LRVAIEEVLP  360
GSRHRFCMWH IMTKVPEKIG NELAKDEKFR NKLNAIVWNE RITSAEFEVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	142	RRRRISNRVNCKAKIYLRKKR
2	123	143	RRRRISNRVNCKAKIYLRKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-50	FAR1 family protein