PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019159708.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 502aa    MW: 56671.3 Da    PI: 8.0624
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019159708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS333.15.2e-1021304974374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     lL  cA+av  +d++ +++lL r++ ++s +g + +Rl +yf++AL arla+++  ly       +++ + +++l+a+++++ ++P+ k+s++ a
  XP_019159708.1 130 LLNLCAQAVWGEDFRTVNELLGRIRRHCSLHGGAAERLSHYFAKALDARLAGTGAALYT------ANRGSLADTLKAYQMYFTACPFKKLSNMFA 218
                     7899************************************************6666663......333458899********************* PP

            GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                      + I + + g++++HiiDf+is+G+QWp+L+q L+ Rp+gpp lRiTg++ pe   +++le+tg+ L+ + ++++vpf+++ +  k++e++  e+
  XP_019159708.1 219 DKSIGKLTMGATKIHIIDFGISHGFQWPCLIQGLSRRPGGPPALRITGIDLPE--PADRLEATGRHLSYYSKKFNVPFQYTSVRKKKWETICSED 311
                     ***************************************************88..9**************************9999********* PP

            GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      r++++E+l+Vn+ ++l+ ++de+++l        +rd++Lk++k+l+P+v+v+    a++n+  F +rf ea+ ++s+lfd+le ++p  +e r
  XP_019159708.1 312 VRIERDEVLVVNCLYRLQDVPDETTALFGstledsPRDTILKFIKQLNPHVFVHGVVSASYNALVFSTRFREAIFHFSSLFDMLEGTVPGGDEGR 406
                     **********************99876433344469*********************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ Ere+lgrei+nvvacega+r +r et+++W+er ++ GF+++  + +++ q+++ ++ +++d + vee+ +++++gWk+r ++++S+W+
  XP_019159708.1 407 VVFEREILGREIMNVVACEGADRMKRPETYKQWQERSQRGGFEQMWPDGDIMRQVRAKVKDYSND-FFVEEDGKWMLQGWKGRVIYAISCWK 497
                     ***************************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    
MDHKANNPSS SHCNYFQGVL DYINQMLMED DDLENGRFVY PDLLALQAAE KSLGDVLNAQ  60
ESSGNDAGRR GDKRHRCGED INDQWAVLLQ RIGSISKARV QARAPARRGR PRGGERGGGN  120
VKEEVDLAGL LNLCAQAVWG EDFRTVNELL GRIRRHCSLH GGAAERLSHY FAKALDARLA  180
GTGAALYTAN RGSLADTLKA YQMYFTACPF KKLSNMFADK SIGKLTMGAT KIHIIDFGIS  240
HGFQWPCLIQ GLSRRPGGPP ALRITGIDLP EPADRLEATG RHLSYYSKKF NVPFQYTSVR  300
KKKWETICSE DVRIERDEVL VVNCLYRLQD VPDETTALFG STLEDSPRDT ILKFIKQLNP  360
HVFVHGVVSA SYNALVFSTR FREAIFHFSS LFDMLEGTVP GGDEGRVVFE REILGREIMN  420
VVACEGADRM KRPETYKQWQ ERSQRGGFEQ MWPDGDIMRQ VRAKVKDYSN DFFVEEDGKW  480
MLQGWKGRVI YAISCWKPEC HQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-135GRAS family protein