PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019159593.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 322aa    MW: 35537.6 Da    PI: 9.4001
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019159593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-1369113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_019159593.1  69 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 113
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MVSVYPNPPP GQESYCYYTR TGLPGMYSPS PATTVNHTAS GDPNFQGGGF APDDQNKKVR  60
KPYTISKSRE SWTEQEHDKF LEALQLFDRD WKKIEAFVGS KTVIQIRSHA QKYFLKVQKS  120
GANEHVPPPR PKRKAAHPYP QKAPKNGLLQ PSSVEPGFVT SPDSLSVPAN AIGSRVLSPW  180
SCNNVPTFSV SHVTKDDARF TSTTVTQNCN SSSNESINGS RPNNETSENG KNKQNKQIRA  240
VPDFARVYEF IGSIFDPNSS DHLQRLNQMD PINVETALIL MKNLSANLVS PEFEGFRRLL  300
SSYGAVSEED KAGALLSRTS GT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.22e-83MYB_related family protein