PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159425.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 333aa MW: 35997.6 Da PI: 7.0439

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159425.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.8	2.3e-35	23	120	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................ssssa 70 +g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + XP_019159425.1 23 TGRKDRHSKVFTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELppwnpnddasvipasheggdvaagssT---- 113 79**************************************************************776644444322222222222111110.... PP TCP 71 seceaesssssasnsssg.....k 89 g + XP_019159425.1 114 -----------------GipleqN 120 .................0223221 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MKRGGGGGGE IVQVEGGHII RSTGRKDRHS KVFTAKGPRD RRVRLSAHTA IQFYDVQDRL 60 GYDRPSKAVD WLIKKAKNAI DKLAELPPWN PNDDASVIPA SHEGGDVAAG SSTGIPLEQN 120 SDSSARYEFP FQKHLEAAGN AAGSSPFILQ EDETTQSIAE TMKSFFPMNS GSSLMNFQSY 180 GHDIMPPRAS IQTEDLGLSL HTLQDHRRPP STSQLFSGAS NPATFDANFS RMVGWNGGGA 240 GGNGGESRVG FFSNHPHHSI PPPQAAAVFS QGGAFSQREP LQSNYSHLFP AWEERAAISN 300 PHFAAEFHVP ARIHGEDEHG GIKPSSPHSN SHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	2e-52	TCP family protein