PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159343.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 362aa MW: 41075.8 Da PI: 8.5223

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159343.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.8e-07	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffar tC G+ C F+H+ XP_019159343.1 3 KRVLCKFFAR-RTCLKGEHCEFSHD 26 99******.***********5 PP
2	zf-CCCH	24.4	4.9e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G+C yG+rC++ H+ XP_019159343.1 34 ICTFYQK-GICAYGSRCRYEHV 54 7****.*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MSKRVLCKFF ARRTCLKGEH CEFSHDWHDP PNNICTFYQK GICAYGSRCR YEHVRISQLQ 60 SSAPSSSVLA RQHLLSSSDP LPANYETVVN GVGHGTGITT EHLNSCKRDH YPKKPAWNQK 120 TGPRDLRDDE KNVKLKSLNA ADQSICSFAA AGTCPEGEKC PHIHGDLCPS CGKHCLHPFR 180 PQEREEHIKK CEKLQKHLEA LKHSQEIDCS VCLERVLSKP TAAERKFGIL SECDHPFCIS 240 CIRNWRSSSP SSGFDVNSAL RACPICRKLS YFVIPSVIWY STKEEKQEIL TSYKTKLRSI 300 DCKHFDFGSG TCPFGSSCFY KHAYRDGRLE EVVLRQLGFD DGTTIIVKNI RLSDFLSNLQ 360 RR

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MSKRVLCKFF ARRTCLKGEH CEFSHDWHDP PNNICTFYQK GICAYGSRCR YEHVRISQLQ  60
SSAPSSSVLA RQHLLSSSDP LPANYETVVN GVGHGTGITT EHLNSCKRDH YPKKPAWNQK  120
TGPRDLRDDE KNVKLKSLNA ADQSICSFAA AGTCPEGEKC PHIHGDLCPS CGKHCLHPFR  180
PQEREEHIKK CEKLQKHLEA LKHSQEIDCS VCLERVLSKP TAAERKFGIL SECDHPFCIS  240
CIRNWRSSSP SSGFDVNSAL RACPICRKLS YFVIPSVIWY STKEEKQEIL TSYKTKLRSI  300
DCKHFDFGSG TCPFGSSCFY KHAYRDGRLE EVVLRQLGFD DGTTIIVKNI RLSDFLSNLQ  360
RR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-154	C3H family protein