PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159209.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 410aa MW: 45262.9 Da PI: 8.5499

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159209.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76	3.8e-24	117	161	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+ v++ +k+CErH+hrg++rsrk +e+ XP_019159209.1 117 DPEPGRCRRTDGKKWRCSKSVVPHQKYCERHMHRGSNRSRKLVEA 161 79****************************************997 PP
2	WRC	60.7	2.4e-19	297	333	2	38
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 +e +rC+R+DGKkWRC+r ++g+k+CE Hlhrg+++ XP_019159209.1 297 TELLRCNRSDGKKWRCKRASIPGHKYCEIHLHRGSKK 333 5789******************************765 PP
3	QLQ	37.5	7.2e-14	47	81	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQ ++L Q+l++Ky+ ++PvP +Ll++i++ XP_019159209.1 47 FTEAQCHELYLQALIFKYIQCGLPVPFHLLLPIWR 81 *********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MQTHSNSGIE KDGSPSVKLV LGYGHVKTEP KDREEEEEEE ESSKCGFTEA QCHELYLQAL 60 IFKYIQCGLP VPFHLLLPIW RTVSTSFASN TTVFFTQQFS AFRDLNAWGF GDMSMMDPEP 120 GRCRRTDGKK WRCSKSVVPH QKYCERHMHR GSNRSRKLVE ASQIESKSHI NPARPLNLEP 180 KPKFLSSTAT DNASPSIGLP SSGVNGHVDK HNSSSVHGVG PNLVRTIAPS DSHNIDGKYA 240 MFNGVNTAKE TNQISEKRNT CQSYVFVPGL GIFPKSGHEH GTGSSSSGIP RNRLAETELL 300 RCNRSDGKKW RCKRASIPGH KYCEIHLHRG SKKITVPSNP VTVALPPPAS MDRICPPLAI 360 PTRYLDDGTS LNTNLSIAPA SHQLVNCDST HTSSSDSTTI TDETPTFVMH

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MQTHSNSGIE KDGSPSVKLV LGYGHVKTEP KDREEEEEEE ESSKCGFTEA QCHELYLQAL  60
IFKYIQCGLP VPFHLLLPIW RTVSTSFASN TTVFFTQQFS AFRDLNAWGF GDMSMMDPEP  120
GRCRRTDGKK WRCSKSVVPH QKYCERHMHR GSNRSRKLVE ASQIESKSHI NPARPLNLEP  180
KPKFLSSTAT DNASPSIGLP SSGVNGHVDK HNSSSVHGVG PNLVRTIAPS DSHNIDGKYA  240
MFNGVNTAKE TNQISEKRNT CQSYVFVPGL GIFPKSGHEH GTGSSSSGIP RNRLAETELL  300
RCNRSDGKKW RCKRASIPGH KYCEIHLHRG SKKITVPSNP VTVALPPPAS MDRICPPLAI  360
PTRYLDDGTS LNTNLSIAPA SHQLVNCDST HTSSSDSTTI TDETPTFVMH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	3e-29	GRF family protein