PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019159207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 412aa MW: 45448.1 Da PI: 8.6646 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76 | 3.8e-24 | 117 | 161 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+ v++ +k+CErH+hrg++rsrk +e+ XP_019159207.1 117 DPEPGRCRRTDGKKWRCSKSVVPHQKYCERHMHRGSNRSRKLVEA 161 79****************************************997 PP | |||||||
2 | WRC | 60.7 | 2.4e-19 | 299 | 335 | 2 | 38 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 +e +rC+R+DGKkWRC+r ++g+k+CE Hlhrg+++ XP_019159207.1 299 TELLRCNRSDGKKWRCKRASIPGHKYCEIHLHRGSKK 335 5789******************************765 PP | |||||||
3 | QLQ | 37.5 | 7.2e-14 | 47 | 81 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQ ++L Q+l++Ky+ ++PvP +Ll++i++ XP_019159207.1 47 FTEAQCHELYLQALIFKYIQCGLPVPFHLLLPIWR 81 *********************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 412 aa Download sequence |
MQTHSNSGIE KDGSPSVKLV LGYGHVKTEP KDREEEEEEE ESSKCGFTEA QCHELYLQAL 60 IFKYIQCGLP VPFHLLLPIW RTVSTSFASN TTVFFTQQFS AFRDLNAWGF GDMSMMDPEP 120 GRCRRTDGKK WRCSKSVVPH QKYCERHMHR GSNRSRKLVE ASQIESKSHI NPARPLNLEP 180 KPKFLSSTAT DNASPSIGLP SSGVNGHVDK HNSSSVHGVG PNLVRTIAPS DSHNIDGKYA 240 MFNGVNTAKE TNQISEKRNT CQSYVFVPGL GIFPKSGHEH GTGKGSSSSG IPRNRLAETE 300 LLRCNRSDGK KWRCKRASIP GHKYCEIHLH RGSKKITVPS NPVTVALPPP ASMDRICPPL 360 AIPTRYLDDG TSLNTNLSIA PASHQLVNCD STHTSSSDST TITDETPTFV MH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36400.1 | 2e-29 | GRF family protein |