PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159182.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 172aa MW: 19279 Da PI: 9.5094

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.4	1.9e-06	32	76	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +E++RR++++ ++ L +l+P++ ++ l + + +++YIk L XP_019159182.1 32 KYVEKNRRNQLKGLYNHLFSLVPSS----QETLPLPDQVDVTINYIKTL 76 568*********************8....56788888888888888877 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MENAGQPPGT ARANLVQKTA VLCGRGPKLE RKYVEKNRRN QLKGLYNHLF SLVPSSQETL 60 PLPDQVDVTI NYIKTLKEKL EKMKHQREEL TKVQMSRKMN SSASSSSHHS LHVEPHPQIQ 120 IHEMGPAMAV VFITGLDNVA TFNNVIRVVR GEEGVEVASA NFQLHGWEMG SE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-17	bHLH family protein