PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158879.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 441aa MW: 50123.6 Da PI: 6.0334

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.5	7e-36	15	105	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d+++++++sw++ng+sfvv+++ efa ++LpkyFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F +g+++ll++ XP_019158879.1 15 FLTKTYELVDDPSTNHIVSWHQNGHSFVVWNPPEFACELLPKYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEEFIRGQTHLLKN 100 9*************************************************************9998.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r++ XP_019158879.1 101 IHRRR 105 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MMDGTQGGSN APAPFLTKTY ELVDDPSTNH IVSWHQNGHS FVVWNPPEFA CELLPKYFKH 60 NNFSSFIRQL NTYGFRKIDP EQWEFANEEF IRGQTHLLKN IHRRRPIHSH SGPGNSVAPL 120 NDSERQGFEE EIERLKHENS FLQSEVERRE QENQEYKLEF QSLEHRLLKV DQRQRRLVAL 180 LGQLSQKPTF ASALMNQLDT HNKKRRLSIS NSLYDEDKIG DNQFLSFQKG LGSITQIPQL 240 SYELVAKLDS SINFCENVLH GIPKTPVEDV YEFAALPRPS TEMQARSGDS EVNVRPCSFH 300 SQPSSPSRDM CSSPELAGSS SHTGTPEISS IFPNLESRHK PSGIDVNTSP ASTLEPTILK 360 DKVEGNSSTF MPNGGNDVFW QQFLTETPGC SDRQEVESER RETVGRKYDS QLAESHRPWW 420 NTINIEHLTE GMGHLSPMTG T

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MMDGTQGGSN APAPFLTKTY ELVDDPSTNH IVSWHQNGHS FVVWNPPEFA CELLPKYFKH  60
NNFSSFIRQL NTYGFRKIDP EQWEFANEEF IRGQTHLLKN IHRRRPIHSH SGPGNSVAPL  120
NDSERQGFEE EIERLKHENS FLQSEVERRE QENQEYKLEF QSLEHRLLKV DQRQRRLVAL  180
LGQLSQKPTF ASALMNQLDT HNKKRRLSIS NSLYDEDKIG DNQFLSFQKG LGSITQIPQL  240
SYELVAKLDS SINFCENVLH GIPKTPVEDV YEFAALPRPS TEMQARSGDS EVNVRPCSFH  300
SQPSSPSRDM CSSPELAGSS SHTGTPEISS IFPNLESRHK PSGIDVNTSP ASTLEPTILK  360
DKVEGNSSTF MPNGGNDVFW QQFLTETPGC SDRQEVESER RETVGRKYDS QLAESHRPWW  420
NTINIEHLTE GMGHLSPMTG T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	3e-80	HSF family protein