PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158566.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 882aa MW: 98242.4 Da PI: 6.7028

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158566.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.9	7.8e-19	192	281	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA vGF+ rk +++++ r+g +++++ Cs+eg+++ + + t+k r+r+++r+gCkak++ k++++g + v+ le+ H+H ++ XP_019158566.1 192 FYKQYAGAVGFDCRKGSTRRR-RDGVVVEKHVLCSREGFKHIISVDakTNKVTRRRVTNRVGCKAKVVYKLKSNGLYSVHYLEERHTHLMC 281 9*************98886.9999**********976655447888899*******************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence
MDAFDEARVI RFNELEAGSK EEKEIGEKAR RRPVGEEEIK FGVLLGMLSC EAVNSDSVGG 60 VCDKVNSTDI GGCDELNLDS VGVEGNGGCD EVKSSDVCVE CSDVGCDEVK SSDACVEGSD 120 GGCNEGNSTE VGVEGNGGCC NEDCPTDVGV GGSVCDLEIS PGLTKYWRPV CADSLKPHVG 180 QKFDSLDGAI AFYKQYAGAV GFDCRKGSTR RRRDGVVVEK HVLCSREGFK HIISVDAKTN 240 KVTRRRVTNR VGCKAKVVYK LKSNGLYSVH YLEERHTHLM CSIIAKQFLK VNRSLDAGHQ 300 MFIASCFRAN IGSVRSYRLF KEIVGDYSSV GATGVDFKNF KRDLMAYILN GDAQLFIDTL 360 FKRREVCEAF DFEYDVDDGD QLSRVFWADA VSRKNFALFG DVVSFDATYR TNRYNLVFVP 420 FTGIDNHKRS ITFGAGLLTR EDVDSYVWLL EKFKKTMRHD PICVVTDQDP AVKLAVARVF 480 GTSKHRFCMW HIMCKVGEKV GPVLSKDEVF RRKLNCIVWN KSLDAKAFED AWSHIMEEYG 540 LGDNGWFRYL FESRTFWASP YFHDEFMSGL VRTTSRSESQ NSFFGSFSNG HSSLVEFLVH 600 FGSAIGAQRH TQAKMNADCE SCFPVLKTPL ALEKHAMDVY AISVFYDVQV EICAACFSCR 660 VASLCNCDGH VSYVINDGDQ RPWCVELVLS DYTATCSCKM FERMGLLCRH IFLVFKDCGL 720 ESIPSRYLVD RWTKGACLKP IFDIDDTVVD QSSKVENVRV LTNILWSDIY ACVGLTDGNI 780 ERLSQLRRVI CEQRQLFLQD GSENGSGVAG GSKQSVINSV CGVVSQQSTV EVHDPIQAKN 840 KGSGKRLKSA REKAARKCVK QSRKCHTCDE YEHNSRTCPL NG

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence

MDAFDEARVI RFNELEAGSK EEKEIGEKAR RRPVGEEEIK FGVLLGMLSC EAVNSDSVGG  60
VCDKVNSTDI GGCDELNLDS VGVEGNGGCD EVKSSDVCVE CSDVGCDEVK SSDACVEGSD  120
GGCNEGNSTE VGVEGNGGCC NEDCPTDVGV GGSVCDLEIS PGLTKYWRPV CADSLKPHVG  180
QKFDSLDGAI AFYKQYAGAV GFDCRKGSTR RRRDGVVVEK HVLCSREGFK HIISVDAKTN  240
KVTRRRVTNR VGCKAKVVYK LKSNGLYSVH YLEERHTHLM CSIIAKQFLK VNRSLDAGHQ  300
MFIASCFRAN IGSVRSYRLF KEIVGDYSSV GATGVDFKNF KRDLMAYILN GDAQLFIDTL  360
FKRREVCEAF DFEYDVDDGD QLSRVFWADA VSRKNFALFG DVVSFDATYR TNRYNLVFVP  420
FTGIDNHKRS ITFGAGLLTR EDVDSYVWLL EKFKKTMRHD PICVVTDQDP AVKLAVARVF  480
GTSKHRFCMW HIMCKVGEKV GPVLSKDEVF RRKLNCIVWN KSLDAKAFED AWSHIMEEYG  540
LGDNGWFRYL FESRTFWASP YFHDEFMSGL VRTTSRSESQ NSFFGSFSNG HSSLVEFLVH  600
FGSAIGAQRH TQAKMNADCE SCFPVLKTPL ALEKHAMDVY AISVFYDVQV EICAACFSCR  660
VASLCNCDGH VSYVINDGDQ RPWCVELVLS DYTATCSCKM FERMGLLCRH IFLVFKDCGL  720
ESIPSRYLVD RWTKGACLKP IFDIDDTVVD QSSKVENVRV LTNILWSDIY ACVGLTDGNI  780
ERLSQLRRVI CEQRQLFLQD GSENGSGVAG GSKQSVINSV CGVVSQQSTV EVHDPIQAKN  840
KGSGKRLKSA REKAARKCVK QSRKCHTCDE YEHNSRTCPL NG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-84	FAR1 family protein