PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158424.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 733aa MW: 83872.6 Da PI: 8.9706

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158424.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.8	3.8e-23	44	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA vGF+vr+s+ k++ r g+i+k++ vCs+eg++e+++k+ t+k++r+r+++r+gC akl+++++k+gk++v++++ H+H l+ XP_019158424.1 44 FYTTYAGIVGFDVRRSSDKRN-RYGQIKKKQVVCSREGFKETKNKEsieeeTTKQKRRRTTNRVGCPAKLVLTLNKEGKYVVKTFVDRHTHVLC 136 9*************99998.7777************9999999999999**********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MDNGGTGVMD VSPGGTHTWI PECDASMNPF EGQQFDTMED GITFYTTYAG IVGFDVRRSS 60 DKRNRYGQIK KKQVVCSREG FKETKNKESI EEETTKQKRR RTTNRVGCPA KLVLTLNKEG 120 KYVVKTFVDR HTHVLCEEKY KRFMKVNRKI DIGHQEFITN CGKVNVGASK SFDIYAEMVG 180 GPENVGATQQ DFKNYRRELL AYMKEKDIQM VISQYLEKKN DSVDMYFEYD VNEKDQLARV 240 FWADRRARLH YGAFGDVVSF DATYKTNRYN LVFVPFTGID NHKRCVTFAA GLIDKEDVES 300 YSWILRNFKN AMGSTPPIVI TDQDPAMKVA IETEFPGTRH RYCMWHIMTK VGDKVGNTLA 360 KNEEFRRALN AVVWNEESTT TGFESAWNAV IQKYGLLENR WLKRMYDERA SWVPPFFDDV 420 FMGGLLRTTS RSEAENRIFQ SNTNKHLCLV EFFKRFESAV RKQRDKHLEL SAACTGQTPP 480 LKTLLRIERE AATVYTLTVF CDVQKEICEG WSTCRVRSYT EAEGVKTYVV EDGTNKRYTV 540 IVEDGSNNTS CTCRLYTKIG LLCRHVFVVL KDERIDHIPP QHITPRWTKE AVKNIEKGTG 600 VGRQIWVNNN GHNTTVEGKV INTIYRCLGM ARGNGEKMQQ ITNVIEELEA TLCDKEVNRA 660 EWNAKRAVME AYCGVPEPDT IKVHPPEVAK TKGSGKRMKS AKEVAIIEQL KKKRTCKTCG 720 LAAGHNSRSC PQK

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MDNGGTGVMD VSPGGTHTWI PECDASMNPF EGQQFDTMED GITFYTTYAG IVGFDVRRSS  60
DKRNRYGQIK KKQVVCSREG FKETKNKESI EEETTKQKRR RTTNRVGCPA KLVLTLNKEG  120
KYVVKTFVDR HTHVLCEEKY KRFMKVNRKI DIGHQEFITN CGKVNVGASK SFDIYAEMVG  180
GPENVGATQQ DFKNYRRELL AYMKEKDIQM VISQYLEKKN DSVDMYFEYD VNEKDQLARV  240
FWADRRARLH YGAFGDVVSF DATYKTNRYN LVFVPFTGID NHKRCVTFAA GLIDKEDVES  300
YSWILRNFKN AMGSTPPIVI TDQDPAMKVA IETEFPGTRH RYCMWHIMTK VGDKVGNTLA  360
KNEEFRRALN AVVWNEESTT TGFESAWNAV IQKYGLLENR WLKRMYDERA SWVPPFFDDV  420
FMGGLLRTTS RSEAENRIFQ SNTNKHLCLV EFFKRFESAV RKQRDKHLEL SAACTGQTPP  480
LKTLLRIERE AATVYTLTVF CDVQKEICEG WSTCRVRSYT EAEGVKTYVV EDGTNKRYTV  540
IVEDGSNNTS CTCRLYTKIG LLCRHVFVVL KDERIDHIPP QHITPRWTKE AVKNIEKGTG  600
VGRQIWVNNN GHNTTVEGKV INTIYRCLGM ARGNGEKMQQ ITNVIEELEA TLCDKEVNRA  660
EWNAKRAVME AYCGVPEPDT IKVHPPEVAK TKGSGKRMKS AKEVAIIEQL KKKRTCKTCG  720
LAAGHNSRSC PQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-90	FAR1 family protein