PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019158355.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 324aa    MW: 36245.8 Da    PI: 8.7754
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019158355.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1621.7e-1973171190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                     +fY++YA+ vGF+vr s+ +++ r+g ++k  +vCs+eg+++  + +           +  +r+r+++ +gC+a+l++k+ +dg+++v+ +e+ H
  XP_019158355.1  73 DFYRQYASLVGFDVRCSSLRRN-REGVVVKDLLVCSREGFKQAVQGSvvvdaaldqaPVAPKRRRVSNWVGCRARLVLKMVDDGVFVVHFIEHRH 166
                     6*****************9999.8888*****************999*******9998889999******************************* PP

            FAR1  86 nHela 90 
                     nH l+
  XP_019158355.1 167 NHCLC 171
                     **998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MDSPGYCLGS LCISVYMVFA FYIGLKVFAR SESLQGCVMD VSPDGTKFWT PSCDEAVRPF  60
EGHTFPSLAH GIDFYRQYAS LVGFDVRCSS LRRNREGVVV KDLLVCSREG FKQAVQGSVV  120
VDAALDQAPV APKRRRVSNW VGCRARLVLK MVDDGVFVVH FIEHRHNHCL CSDVAKPFLR  180
GNRSMDVQHQ IFVLKCARAN VGPNRSFRLA REFAGSYSNV GATCVDFKNL KRDLMAFIGT  240
SDAHIVVKKY AKKDQLCRAF WAEPIAKENF SAFGEVVSFD ATYGTNRYGM VLVPFTGVDN  300
HKRGVTFAMG LISREDVDSY VWLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133137KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-30FAR1 family protein