PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158342.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 749aa MW: 85602.2 Da PI: 8.6706

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67	4.7e-21	59	153	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY YA ++GF+vr+s+ kk+ + g + k++ vCs++g++e++ k+ +k++r+r+++r+gC a++++k dg++ v+k+e+ H+H l XP_019158342.1 59 KFYTMYAASTGFDVRRSSDKKN-DFGIVLKKDVVCSRQGFKEDRGKEtmgeagGSKKKRRRTTNRVGCGARIVMKIVPDGRYTVHKFEERHTHCL 152 6**************99998.8888***************99998999999********************************99 PP FAR1 90 a 90 + XP_019158342.1 153 C 153 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MEAPAIGVGS EDEVNASESD NDCRMDMSPG GTNYWYTECD RSLKPYEGQM FNALEDGIKF 60 YTMYAASTGF DVRRSSDKKN DFGIVLKKDV VCSRQGFKED RGKETMGEAG GSKKKRRRTT 120 NRVGCGARIV MKIVPDGRYT VHKFEERHTH CLCQESQKPL MKVNRKIEIA HQEFITKCEK 180 ANVGASKSYD IYAEIVGGPQ NVGATQQDFK NYRRDLLAYM KWGDVQMVIS NYLEQKTDCA 240 DMYFEYEVNA NDQLSRVFWA DGMARKNYGA FGDVVSFDAT YKTNRYHLVF VPFTGVDNHK 300 RCVTFAAALI DKEDVESYSW VLNQFKNAMG AVPPIVITDQ DPAMKIAIAD VFRGSRHRYC 360 MWHIMTKVGE KVGAQMSKNN EFRKALNSVV WNEKATRTEF EIGWKSVIGK YNLNENRWLT 420 RMYEERASWV PAFCDDVFMG GLLRTTSRSE AENRIFQGNM NKHLCLVEFF TRFEGAVRKQ 480 RKNNLELTAS SFGNKPHFET QLQIERSAAT VYTLTVFYEV QKQISAGCFK CRVRSYTEAN 540 GVKTYIVEDE NEQQYTVIVQ DGSNIACTCR MYARVGLLCS HVFVVLKDER IDEIPPQHIT 600 PRWTREAVKH SHIDTDGDKH NGNNTFGQGN IEEGQLMNIF HRCLGKAKRR PEKLKEIRVW 660 MEGFEATFGE DEMTDWNVNG KRAIMESYCG VVTPKAIEVH PPPVAKTKGS GKRLKSAREL 720 AMAEHYKKKR TCKTCGLADG HNSRSCPRK

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MEAPAIGVGS EDEVNASESD NDCRMDMSPG GTNYWYTECD RSLKPYEGQM FNALEDGIKF  60
YTMYAASTGF DVRRSSDKKN DFGIVLKKDV VCSRQGFKED RGKETMGEAG GSKKKRRRTT  120
NRVGCGARIV MKIVPDGRYT VHKFEERHTH CLCQESQKPL MKVNRKIEIA HQEFITKCEK  180
ANVGASKSYD IYAEIVGGPQ NVGATQQDFK NYRRDLLAYM KWGDVQMVIS NYLEQKTDCA  240
DMYFEYEVNA NDQLSRVFWA DGMARKNYGA FGDVVSFDAT YKTNRYHLVF VPFTGVDNHK  300
RCVTFAAALI DKEDVESYSW VLNQFKNAMG AVPPIVITDQ DPAMKIAIAD VFRGSRHRYC  360
MWHIMTKVGE KVGAQMSKNN EFRKALNSVV WNEKATRTEF EIGWKSVIGK YNLNENRWLT  420
RMYEERASWV PAFCDDVFMG GLLRTTSRSE AENRIFQGNM NKHLCLVEFF TRFEGAVRKQ  480
RKNNLELTAS SFGNKPHFET QLQIERSAAT VYTLTVFYEV QKQISAGCFK CRVRSYTEAN  540
GVKTYIVEDE NEQQYTVIVQ DGSNIACTCR MYARVGLLCS HVFVVLKDER IDEIPPQHIT  600
PRWTREAVKH SHIDTDGDKH NGNNTFGQGN IEEGQLMNIF HRCLGKAKRR PEKLKEIRVW  660
MEGFEATFGE DEMTDWNVNG KRAIMESYCG VVTPKAIEVH PPPVAKTKGS GKRLKSAREL  720
AMAEHYKKKR TCKTCGLADG HNSRSCPRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	118	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-90	FAR1 family protein