PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158224.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 587aa MW: 67638 Da PI: 9.204

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.9	6.6e-13	29	110	1	71
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkke 71 ++Y++YA +vGF++r s++ k ++++it ++ Cs+e ++++ ++ ++ +r+r++++tgC+a+++ k XP_019158224.1 29 EYYKNYAAKVGFDTRSSSHVKA-HDETITLKQIICSREKFKNSGAQNchsksnvdvgevPSNPKRRRVSNKTGCRARIVFKYI 110 69*************99998.7777************99999999*9998888999**********99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MTQYWTLHCE DKIRPLVDMT FKTLDVGIEY YKNYAAKVGF DTRSSSHVKA HDETITLKQI 60 ICSREKFKNS GAQNCHSKSN VDVGEVPSNP KRRRVSNKTG CRARIVFKYI GIEVLVLARQ 120 FLKGNRNISA AHQKFILDCA KANIGASKSH GLYSQIVGDY SEVGPTVVGF KNVRRDLRDF 180 ILGADAQILV HNLVKKQEMC PAFAFEYEVD EDEQMSRLFW ANPVSKKNFA AFGDVVSFDA 240 TYSTNMYDLD PAMKVAIPRV FKQARHRYCM WHIMCKVGEK VGPTLNKNEG FKNKLNSIVW 300 ISFLEPANFE TQWKQLMENF NLVEHNWFTN MFEVRNLWIP AYFRDVFMGG LLRTMSRSKS 360 ENYTYNRFTG PQSSLVEFMM NLDTALKSQR NTNAKLNSDN EGYNPNMRTS LGIEKHASIV 420 YTITIFYKVQ AEICASYFKC RVLSVREDAG ILHYLIMDGK DKTFSVVHNV NEHEATCSCK 480 MFKMVELLCR RIFVVYKDLE KIRLKYVDNR WTKDASLKAT CEIDGVIYDQ NRPKDEKKVL 540 LNKLWADLHC CIYLAGSNME QLTAFSQVIN EQKQLPMLGK EKVIPSA

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MTQYWTLHCE DKIRPLVDMT FKTLDVGIEY YKNYAAKVGF DTRSSSHVKA HDETITLKQI  60
ICSREKFKNS GAQNCHSKSN VDVGEVPSNP KRRRVSNKTG CRARIVFKYI GIEVLVLARQ  120
FLKGNRNISA AHQKFILDCA KANIGASKSH GLYSQIVGDY SEVGPTVVGF KNVRRDLRDF  180
ILGADAQILV HNLVKKQEMC PAFAFEYEVD EDEQMSRLFW ANPVSKKNFA AFGDVVSFDA  240
TYSTNMYDLD PAMKVAIPRV FKQARHRYCM WHIMCKVGEK VGPTLNKNEG FKNKLNSIVW  300
ISFLEPANFE TQWKQLMENF NLVEHNWFTN MFEVRNLWIP AYFRDVFMGG LLRTMSRSKS  360
ENYTYNRFTG PQSSLVEFMM NLDTALKSQR NTNAKLNSDN EGYNPNMRTS LGIEKHASIV  420
YTITIFYKVQ AEICASYFKC RVLSVREDAG ILHYLIMDGK DKTFSVVHNV NEHEATCSCK  480
MFKMVELLCR RIFVVYKDLE KIRLKYVDNR WTKDASLKAT CEIDGVIYDQ NRPKDEKKVL  540
LNKLWADLHC CIYLAGSNME QLTAFSQVIN EQKQLPMLGK EKVIPSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-52	FAR1 family protein