PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157980.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 550aa MW: 62290.8 Da PI: 8.7882

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157980.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.4	4.7e-13	66	145	23	90
FAR1 23 krngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +r+g+ t+++ vC++eg++++ ++ ++ +r+r+++rtgC+a++ k + ++vt++ ++HnH ++ XP_019157980.1 66 HRDGTKTQKQIVCNREGFKNTGAQHchsqssadagegPSRPKRRRVSNRTGCRARIIFKYIGVAGYQVTTFIEKHNHGMS 145 578999*************999999***999899999********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MAGVPSDFQS TNNPSLSPSS SSNGHTLTIS PGMTQYWIPH CEDEIKPAVD MIFKTLDAGL 60 VPSLQHRDGT KTQKQIVCNR EGFKNTGAQH CHSQSSADAG EGPSRPKRRR VSNRTGCRAR 120 IIFKYIGVAG YQVTTFIEKH NHGMSSVLAS YIVGDYSKVG ATVVDFKNVR RDLRAYILGA 180 DAQILAMGIE PRIIVTDQDP AMKVAIPTVG PTLNKDEEFR NKLSSIVWTS SLEPPDFEKQ 240 WRELMEKYNL VEHNWFTTMF EARKHWIPTY FRDGFMGGLL RTTSRSESEN YTYNHFTGPQ 300 SSLVEFMMNS DSALKSQRNT NAKLNSDNEG YNPDMKTPLG IEKHASIVYT ITVFYQVQEE 360 ICASCFKCMV LSVREYGGML HYDIMDGKNK RFTVVQNVND HEAKCSCKMF EMKQLLMSRK 420 EKLSPQHSRK TVIESFCGSI AISEINILPP KHAKNKGNGK RIKSSKELAM EKEKGRRCNF 480 CGVRGDQHDT RTCPLNPKNK DKQKGKKKMM SLKLRMTNDA SGLECVVFVV SYNHYKLEGE 540 EDENDREDEE

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MAGVPSDFQS TNNPSLSPSS SSNGHTLTIS PGMTQYWIPH CEDEIKPAVD MIFKTLDAGL  60
VPSLQHRDGT KTQKQIVCNR EGFKNTGAQH CHSQSSADAG EGPSRPKRRR VSNRTGCRAR  120
IIFKYIGVAG YQVTTFIEKH NHGMSSVLAS YIVGDYSKVG ATVVDFKNVR RDLRAYILGA  180
DAQILAMGIE PRIIVTDQDP AMKVAIPTVG PTLNKDEEFR NKLSSIVWTS SLEPPDFEKQ  240
WRELMEKYNL VEHNWFTTMF EARKHWIPTY FRDGFMGGLL RTTSRSESEN YTYNHFTGPQ  300
SSLVEFMMNS DSALKSQRNT NAKLNSDNEG YNPDMKTPLG IEKHASIVYT ITVFYQVQEE  360
ICASCFKCMV LSVREYGGML HYDIMDGKNK RFTVVQNVND HEAKCSCKMF EMKQLLMSRK  420
EKLSPQHSRK TVIESFCGSI AISEINILPP KHAKNKGNGK RIKSSKELAM EKEKGRRCNF  480
CGVRGDQHDT RTCPLNPKNK DKQKGKKKMM SLKLRMTNDA SGLECVVFVV SYNHYKLEGE  540
EDENDREDEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	111	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-25	FAR1 family protein