PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157972.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 784aa MW: 89689.6 Da PI: 7.9681

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.7	3.3e-12	70	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGF++r s+ + r+g+ t+++ vC++eg+++ ++ +++++ e + k + ++ + ++vt++ ++HnH+++ XP_019157972.1 70 EFYNHYAAKVGFHTRSSSVVTA-RDGTKTQKQIVCNREGFKNIGAQHcHSQSSADAGEGPSHPKQRRVIPYIGAAGYQVTTFIEKHNHSMS 159 6************9998887.8888***********9998844555556666677888899999999*************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence
MKERLGMMVV LMFPVYFQST NNPSLSPSSS SNGHTLTISP GMTQYWIPHC EDEIKPAVDM 60 IFKTLDAGIE FYNHYAAKVG FHTRSSSVVT ARDGTKTQKQ IVCNREGFKN IGAQHCHSQS 120 SADAGEGPSH PKQRRVIPYI GAAGYQVTTF IEKHNHSMSS VLARQFLKGN RNISSVHQKF 180 ILDCAKANIG ASKSHGLYSH IVGDYSEVGV TVVDFKNVRR DLRAYILGAD AQILVHNLIK 240 KQEMCPAFAF DYEVDEDEQM SRLFWADPMS KKNFAAFGDV VSFDATYSTN RYNLAMSIEP 300 RIIVTDQDPA MKVAIPTVFN QARHRYCMWH IMCKVGEKVG PTLNKDEEFR NKLNSIVWTS 360 FLEPPDFEKQ WRELMEKYNL IEHNWFSTMF EARKHWIPAY FRDGFMGGLL RTTSRSESEN 420 YTYSRFTGPQ SSLVEFMMNF DNALKSQRNT NAKLNSDNEG YNPDMKTPLG IEKHASIVYT 480 ITVFYQVQEE ICASCFKCMV LSVREDGGML HYDIMDGKNK RFTVVHNVND HEAKCSCKMF 540 EMVGLLCRHI FVVFRDLEKI PLKYVVNRWT KDASLKATFE IDGVIYDQNG PKDEKKMLLN 600 KVWSDIHCCM DLEGSNMEQL TAFSQVINEQ KQLLLSGKEK LSPQHSRRTV IESYCGSTEI 660 SEIHILPPKH AKNKGSDKRI KSSKELAMEK QEVRRCNFCG VRGDHHDTKT CPLNPKNKDK 720 QKVEILEFNV QLLLVFVFIT DLCLTITATS LIIRHITSHP QMLNSQPLDV VWKLNDELEA 780 ENNK

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence

MKERLGMMVV LMFPVYFQST NNPSLSPSSS SNGHTLTISP GMTQYWIPHC EDEIKPAVDM  60
IFKTLDAGIE FYNHYAAKVG FHTRSSSVVT ARDGTKTQKQ IVCNREGFKN IGAQHCHSQS  120
SADAGEGPSH PKQRRVIPYI GAAGYQVTTF IEKHNHSMSS VLARQFLKGN RNISSVHQKF  180
ILDCAKANIG ASKSHGLYSH IVGDYSEVGV TVVDFKNVRR DLRAYILGAD AQILVHNLIK  240
KQEMCPAFAF DYEVDEDEQM SRLFWADPMS KKNFAAFGDV VSFDATYSTN RYNLAMSIEP  300
RIIVTDQDPA MKVAIPTVFN QARHRYCMWH IMCKVGEKVG PTLNKDEEFR NKLNSIVWTS  360
FLEPPDFEKQ WRELMEKYNL IEHNWFSTMF EARKHWIPAY FRDGFMGGLL RTTSRSESEN  420
YTYSRFTGPQ SSLVEFMMNF DNALKSQRNT NAKLNSDNEG YNPDMKTPLG IEKHASIVYT  480
ITVFYQVQEE ICASCFKCMV LSVREDGGML HYDIMDGKNK RFTVVHNVND HEAKCSCKMF  540
EMVGLLCRHI FVVFRDLEKI PLKYVVNRWT KDASLKATFE IDGVIYDQNG PKDEKKMLLN  600
KVWSDIHCCM DLEGSNMEQL TAFSQVINEQ KQLLLSGKEK LSPQHSRRTV IESYCGSTEI  660
SEIHILPPKH AKNKGSDKRI KSSKELAMEK QEVRRCNFCG VRGDHHDTKT CPLNPKNKDK  720
QKVEILEFNV QLLLVFVFIT DLCLTITATS LIIRHITSHP QMLNSQPLDV VWKLNDELEA  780
ENNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-79	FAR1 family protein