PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157694.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 359aa MW: 37597.8 Da PI: 8.0644

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.2	1.2e-37	85	158	5	77
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaes 77 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pa++++tgt++++a+++ ++s XP_019157694.1 85 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAVIAATGTGTIPANFStLNVS 158 899***************************************************************88843333 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEFMEPHTHS SSSRNNNGAS SSDHHRPPPP QAQEPPPPPS SLQLVSHQSQ PDPPTHGPFI 60 GSISGKSART PTHPLLSPPP SNLVKKPSKD RHTKVDGRGR RIRMPALCAA RVFQLTRELG 120 HKSDGETIEW LLHQAEPAVI AATGTGTIPA NFSTLNVSLR GGGTTISAPP SKPAPLFIHG 180 GGAAFHRHFS LTGGGVQDNE PGSDPKPASS HPSTFIPAPA MWAVAAPAAG NAGNSFWMLP 240 LSGGATSGTP TVAQPEQPHL WQYKGSGGFE FPGGRFSPVH LGAAQPVQQL GLGVSESNMG 300 MLPSAAAINA AAYTTSSNIK MVDLGMTLEQ HQHHGRHDNN QNQQPQGSDS GGENPKDSE

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEFMEPHTHS SSSRNNNGAS SSDHHRPPPP QAQEPPPPPS SLQLVSHQSQ PDPPTHGPFI  60
GSISGKSART PTHPLLSPPP SNLVKKPSKD RHTKVDGRGR RIRMPALCAA RVFQLTRELG  120
HKSDGETIEW LLHQAEPAVI AATGTGTIPA NFSTLNVSLR GGGTTISAPP SKPAPLFIHG  180
GGAAFHRHFS LTGGGVQDNE PGSDPKPASS HPSTFIPAPA MWAVAAPAAG NAGNSFWMLP  240
LSGGATSGTP TVAQPEQPHL WQYKGSGGFE FPGGRFSPVH LGAAQPVQQL GLGVSESNMG  300
MLPSAAAINA AAYTTSSNIK MVDLGMTLEQ HQHHGRHDNN QNQQPQGSDS GGENPKDSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	1e-51	TCP family protein