PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157578.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 622aa MW: 70101.2 Da PI: 8.2847

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.7e-21	66	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn YA++vGFsvrk +++++ +++i +++f C k g++++ ++ + ++ rtgC a ++ dg w vtk +eHnHel++ XP_019157578.1 66 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKRFFCAKAGYKQKPNSG--VKLYSKIDMRTGCGAFVQFDVGGDGMWTVTKHLKEHNHELCS 153 7**************************************99887..888999********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MEETTVRGED STDMISAIPV NEDCVGDSIS NDQAELNIDI DGSSSSPVDE DLVGVVVRNV 60 DEAFELYNGY AYRVGFSVRK GQQRYKASTK SIQMKRFFCA KAGYKQKPNS GVKLYSKIDM 120 RTGCGAFVQF DVGGDGMWTV TKHLKEHNHE LCSFGKSHLL RSHRRVGNNQ LEYLKDMKSS 180 GVALADGMRF LKHQSGGSPL VGFTNRDAYN SMASVSLKCL DGSDSNSLIE IFRRRQSNEA 240 DFFFDFENSK KHIKALRNHK DFLDMFNCVL KYTETEAEFE VYWTRMVTKY SCHKNTWLEK 300 LYDCREKWCP AFNKDYFSGG ILSSQRSEST NHAISRRLSK TAGLCDFYSS FVSVISEWRS 360 KENGEDFRCS QGVPAMMMDH VKLLSHAREC KYHVWRPDID IIRHEVTFKA INLDICCSCK 420 LFSELGILCC HCLRILHVHC VSSIPDKYIL KRWTKKVVEG RNVDIASVFY NGGVPSSIWA 480 VEISRKFQRL IVSSQDNSVA RQFCDEAVEN ARKNIEAEIG DVNTEEGAVS SSSGIVQDPS 540 SRRGKGVRNK RSSSVIEKKY NAARGRKSAA NKLASITKGS VQSLVLENIS EIARDGYLVH 600 PSTGGSQFVH FNKNVDHDVA ID

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MEETTVRGED STDMISAIPV NEDCVGDSIS NDQAELNIDI DGSSSSPVDE DLVGVVVRNV  60
DEAFELYNGY AYRVGFSVRK GQQRYKASTK SIQMKRFFCA KAGYKQKPNS GVKLYSKIDM  120
RTGCGAFVQF DVGGDGMWTV TKHLKEHNHE LCSFGKSHLL RSHRRVGNNQ LEYLKDMKSS  180
GVALADGMRF LKHQSGGSPL VGFTNRDAYN SMASVSLKCL DGSDSNSLIE IFRRRQSNEA  240
DFFFDFENSK KHIKALRNHK DFLDMFNCVL KYTETEAEFE VYWTRMVTKY SCHKNTWLEK  300
LYDCREKWCP AFNKDYFSGG ILSSQRSEST NHAISRRLSK TAGLCDFYSS FVSVISEWRS  360
KENGEDFRCS QGVPAMMMDH VKLLSHAREC KYHVWRPDID IIRHEVTFKA INLDICCSCK  420
LFSELGILCC HCLRILHVHC VSSIPDKYIL KRWTKKVVEG RNVDIASVFY NGGVPSSIWA  480
VEISRKFQRL IVSSQDNSVA RQFCDEAVEN ARKNIEAEIG DVNTEEGAVS SSSGIVQDPS  540
SRRGKGVRNK RSSSVIEKKY NAARGRKSAA NKLASITKGS VQSLVLENIS EIARDGYLVH  600
PSTGGSQFVH FNKNVDHDVA ID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	4e-26	FAR1 family protein