PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157522.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 420aa    MW: 48339.7 Da    PI: 8.4436
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157522.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1349.4e-112593190
            FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                    + f+Csk g++ + +     +  ++   rtgC a+++    +dg w vtk ++ HnHel+
  XP_019157522.1  2 KMFMCSKAGFKVKANAG--VRAYSKIDIRTGCGACVQFDVGEDGLWTVTKHVKVHNHELC 59
                    67*********998877..7888999*********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    
MKMFMCSKAG FKVKANAGVR AYSKIDIRTG CGACVQFDVG EDGLWTVTKH VKVHNHELCA  60
VDKSHLLRSH RNVGDNQLLY LKDLKKSGVA MADGIRFLKH QAGGSPLIGF TNRDAYNSIA  120
SDTSKRLDGT DSNSLIEIFR KRQSTESDFF FDFEVDCDSR LCSFFWRDGR MRQDYELFGD  180
LLVIDYKCHK NSWIQKLYDC REKWCPAFNK DYFSGGILSS QRSETTNHSI SRRLSKTAGL  240
CDFYSSFVSV ISEWRSKENG EDFRCAQGAP TMMMEHVKLL LHAREVYTIE IYFLFEEQFM  300
KGNACHQEMV LNDGCQFKYH VWRPDIDIIR HEVSFKLATL DISCSCKLIS ELGILCCHCL  360
RILHIHCVSS IPNKYIMKRW TKKVADGRDV NTGPMFYRAG VPPSIWVVEI CRKFQRLIGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-20FAR1 family protein