PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157321.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 433aa MW: 47714.3 Da PI: 8.1458

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157321.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.1	9.7e-11	97	121	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t +Ck+Gd+CkF H+ XP_019157321.1 97 GEKDCAHYMLTRICKFGDSCKFDHP 121 7889********************8 PP
2	zf-CCCH	35.4	1.8e-11	146	172	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++t CkyG rCkF+H++ XP_019157321.1 146 PGEPDCPYYLKTQKCKYGIRCKFNHPK 172 5789*********************96 PP
3	zf-CCCH	40.3	5.2e-13	191	215	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+++tG Ck+G++CkF+H++ XP_019157321.1 191 EPLCAFYMKTGKCKFGATCKFHHPK 215 79*********************96 PP
4	zf-CCCH	38.5	1.9e-12	265	288	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_019157321.1 265 EVDCPFYLKTGSCKYGATCRYNHP 288 689********************9 PP
5	zf-CCCH	42.9	8e-14	347	372	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f+++tG+Ck+G+rC+F+H+ XP_019157321.1 347 PGQVECDFYMKTGECKFGERCRFHHP 372 5789*********************9 PP
6	zf-CCCH	37.8	3.2e-12	406	427	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p XP_019157321.1 406 CPYYMKTGTCKYGATCKFDHPP 427 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MLFNYANNSF ASAGSRIPTA PQSSWSGPPG VDIGPAVADP FLSGLKRPSS EALYHQTVLG 60 GHSTVGQTES WFSSNPLAKR PRFETACNLP IYPQRPGEKD CAHYMLTRIC KFGDSCKFDH 120 PIWVPEGGIP DWKEVAITSE SLPERPGEPD CPYYLKTQKC KYGIRCKFNH PKDKDAFENT 180 DVLVLPERPS EPLCAFYMKT GKCKFGATCK FHHPKDIQIQ ASAQENGSTS LTGLVDNGEM 240 IGDVKQTVSP AMLHNSKGLP IRLGEVDCPF YLKTGSCKYG ATCRYNHPDR YTINPPTAAI 300 GHAFVTSPAA HLNVGVVNPT ASLFQTFDAR MAQTMFGFAT TIYPQRPGQV ECDFYMKTGE 360 CKFGERCRFH HPLDRSSPVT SSMEGQQQNV KLSLAGLPRR EGAIHCPYYM KTGTCKYGAT 420 CKFDHPPPGE VMG

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MLFNYANNSF ASAGSRIPTA PQSSWSGPPG VDIGPAVADP FLSGLKRPSS EALYHQTVLG  60
GHSTVGQTES WFSSNPLAKR PRFETACNLP IYPQRPGEKD CAHYMLTRIC KFGDSCKFDH  120
PIWVPEGGIP DWKEVAITSE SLPERPGEPD CPYYLKTQKC KYGIRCKFNH PKDKDAFENT  180
DVLVLPERPS EPLCAFYMKT GKCKFGATCK FHHPKDIQIQ ASAQENGSTS LTGLVDNGEM  240
IGDVKQTVSP AMLHNSKGLP IRLGEVDCPF YLKTGSCKYG ATCRYNHPDR YTINPPTAAI  300
GHAFVTSPAA HLNVGVVNPT ASLFQTFDAR MAQTMFGFAT TIYPQRPGQV ECDFYMKTGE  360
CKFGERCRFH HPLDRSSPVT SSMEGQQQNV KLSLAGLPRR EGAIHCPYYM KTGTCKYGAT  420
CKFDHPPPGE VMG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein