PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157303.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 707aa MW: 80263.7 Da PI: 8.6449

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.6	1.2e-19	40	126	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yne+A++vGFsvrk k++++ +++i +++f+Csk g++ + + + ++ tr gC a ++ +dg w v+k + HnHel+ XP_019157303.1 40 LYNEHAYRVGFSVRKGKQRYKASTKTIQMKRFYCSKAGFKCKADGG--VKLYSKIDTRAGCGAFVQFDVGDDGLWTVAKHMKVHNHELC 126 7*************************************999988..88899*********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MDEATNQSEL NADRYSMMEV RVDEDLVGVV VSNGDEAFEL YNEHAYRVGF SVRKGKQRYK 60 ASTKTIQMKR FYCSKAGFKC KADGGVKLYS KIDTRAGCGA FVQFDVGDDG LWTVAKHMKV 120 HNHELCDLDK SHLLRSHRRV GSNQLSCLKD LKQSGVGVAG GIRFLKHQSG GSPLVGFTSR 180 DAYNSMAFDT VKSLDGTDSN SLIEIFRRRQ SNESDFFFDF EVDSNSRLWM NHHCMNVMFG 240 CGFLKNERIE SFVWLFKAFL RSMDGKCPQS IMTDQCAAMA AAISIVFPTS RHPLCIWHIG 300 ENSKKHIKTL RNNKEFMDIF NCLLKYTDTE AEFEFYWTRM VTEFKCHKNS WLGKLYDCRE 360 KWCPAFNKDY FSGGILSSQR SETTNHSISR RLSKTAGLCD FYSSFVSVIS EWRSKENGED 420 FRCAQGVPAM MIDNVKLLSH AREVYTIEIY FLFEEQLMKG SACHQEIVLN DGCQYKYHVW 480 RPDVDIIRHE VSFKPINLDI SCSCKPFSEM GILCSHCLRI LDINCVPSIP DKYIMKRWTK 540 KVAAGRNVIF DSLSYNLGVP PSIWVVEISR KFQKLVVSSQ NNSVARQFCD EAVENAKKLI 600 EAEMGKVNIE GCGVSSSNVI VQDPSSRRLK GVRNKRRSSI IAKKYTIARG RRSAANKVAS 660 NIKGAVQSLV LENISEIAGD GYLVHPTSSS SQFVRFNKSL DENVVVD

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MDEATNQSEL NADRYSMMEV RVDEDLVGVV VSNGDEAFEL YNEHAYRVGF SVRKGKQRYK  60
ASTKTIQMKR FYCSKAGFKC KADGGVKLYS KIDTRAGCGA FVQFDVGDDG LWTVAKHMKV  120
HNHELCDLDK SHLLRSHRRV GSNQLSCLKD LKQSGVGVAG GIRFLKHQSG GSPLVGFTSR  180
DAYNSMAFDT VKSLDGTDSN SLIEIFRRRQ SNESDFFFDF EVDSNSRLWM NHHCMNVMFG  240
CGFLKNERIE SFVWLFKAFL RSMDGKCPQS IMTDQCAAMA AAISIVFPTS RHPLCIWHIG  300
ENSKKHIKTL RNNKEFMDIF NCLLKYTDTE AEFEFYWTRM VTEFKCHKNS WLGKLYDCRE  360
KWCPAFNKDY FSGGILSSQR SETTNHSISR RLSKTAGLCD FYSSFVSVIS EWRSKENGED  420
FRCAQGVPAM MIDNVKLLSH AREVYTIEIY FLFEEQLMKG SACHQEIVLN DGCQYKYHVW  480
RPDVDIIRHE VSFKPINLDI SCSCKPFSEM GILCSHCLRI LDINCVPSIP DKYIMKRWTK  540
KVAAGRNVIF DSLSYNLGVP PSIWVVEISR KFQKLVVSSQ NNSVARQFCD EAVENAKKLI  600
EAEMGKVNIE GCGVSSSNVI VQDPSSRRLK GVRNKRRSSI IAKKYTIARG RRSAANKVAS  660
NIKGAVQSLV LENISEIAGD GYLVHPTSSS SQFVRFNKSL DENVVVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-62	FAR1 family protein